Skip to main content
Fig. 5 | Rice

Fig. 5

From: Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition

Fig. 5

Differential representation in the rhizosphere of early-diverged Oryza species. a — Differential abundance of OTUs in the earliest diverged Oryza species rhizosphere was assessed by fitting a local regression model with a negative binomial distribution to the sequence count data and testing for differential abundance with a likelihood ratio test as implemented in the R package DESeq2 (Love et al. 2014) in conjunction with the Phyloseq package (McMurdie and Holmes 2013). Taxa are represented as dots in the graph of fold change. Positive values indicate higher representation in early-diverged species samples. Samples with a p value less than 0.05 and a mean representation over all samples higher than 1. b — Several taxa that are Type I (obligate) and Type II (facultative) methanotrophs of the families Methylococcaceae and Methylocystaceae respectively were more common in the rhizosphere of the earliest diverged species of the genus (O. brachyantha, O. granulata and O. longiglumis). The bar graph represents the total reads for the genus Methylomonas for each species/cultivar from a randomly selected 10000 reads from each sample

Back to article page