Table 1 Functional information for kinase genes with known functions
Type of meta-expression | Character_major | LOC_id | Gene name | Gene symbol | Method | character_minor | DOI reference |
|---|---|---|---|---|---|---|---|
IAA | Morphological trait | LOC_Os01g52050.1 | dwarf 61 | d61 | Mutant | Culm leaf | 10.1105/tpc.12.9.1591 |
Anther/Pollen | Morphological trait | LOC_Os02g58610.1 | N-acetylglucosaminyltransferase I | GnTI | Mutant | Culm leaf | 10.1111/tpj.12087 |
Root, BPH | Morphological trait | LOC_Os06g50920.1 | increased leaf angle1 | ila1 | Mutant | Culm leaf | |
Morphological trait | LOC_Os02g05980.1 | leucine-rich repeat receptor-like kinase1 | LRK1 | Overexpression | Culm leaf | ||
Morphological trait | LOC_Os02g05980.1 | Leucine-rich repeat receptor-like kinase 1 | LRK1 | Overexpression | Culm leaf | ||
Morphological trait | LOC_Os02g40860.1 | Low Temperature Growth 1 | LTG1 | Others | Culm leaf | ||
Morphological trait | LOC_Os08g07760.1 | OsBAK1 | OsBAK1 | Knockdown | Culm leaf | ||
Morphological trait | LOC_Os05g40770.1 | Leucine-rich-repeat receptor-like kinases | OsRPK1 | Knockdown Overexpression | Culm leaf | ||
Morphological trait | LOC_Os02g32610.2 | CONSTITUTIVE TRIPLE-RESPONSE2 | OsCTR2 | Mutant | Culm leaf | ||
Morphological trait | LOC_Os04g48760.1 | xiao | xiao | Mutant | Culm leaf | ||
IAA | Morphological trait | LOC_Os01g52050.1 | dwarf 61 | d61 | Mutant | Dwarf | |
Anther/Pollen | Morphological trait | LOC_Os02g58610.1 | N-acetylglucosaminyltransferase I | GnTI | Mutant | Dwarf | |
Morphological trait | LOC_Os02g05980.1 | leucine-rich repeat receptor-like kinase1 | LRK1 | Overexpression | Dwarf | ||
Morphological trait | LOC_Os02g05980.1 | Leucine-rich repeat receptor-like kinase 1 | LRK1 | Overexpression | Dwarf | ||
Morphological trait | LOC_Os02g40860.1 | Low Temperature Growth 1 | LTG1 | Others | Dwarf | ||
Leaf/Flag leaf/Shoot, ABA | Morphological trait | LOC_Os02g36570.1 | activity of bc1 complex 1–2 | OsABC1-2 | Mutant | Dwarf | |
Morphological trait | LOC_Os08g07760.1 | OsBAK1 | OsBAK1 | Knockdown | Dwarf | ||
Morphological trait | LOC_Os02g03410.1 | Ca2 + −dependent protein kinase 4 | OsCPK4 | Knockdown | Dwarf | ||
Morphological trait | LOC_Os05g40770.1 | Leucine-rich-repeat receptor-like kinases | OsRPK1 | Knockdown Overexpression | Dwarf | ||
Morphological trait | LOC_Os04g48760.1 | xiao | xiao | Mutant | Dwarf | ||
Morphological trait | LOC_Os06g50340.1 | FLORAL ORGAN NUMBER1 | fon1 | Mutant | Panicle flower | ||
Morphological trait | LOC_Os02g05980.1 | leucine-rich repeat receptor-like kinase1 | LRK1 | Overexpression | Panicle flower | ||
SAM/Panicle, IAA | Morphological trait | LOC_Os12g42020.1 | pinoid | OsPID | Overexpression | Panicle flower | |
Morphological trait | LOC_Os02g14120.1 | defective in outer cell layer specification 1 | Docs1 | Mutant | Root | ||
Morphological trait | LOC_Os02g40860.1 | Casein Kinase I | OsCKI1 | Knockdown | Root | ||
SAM/Panicle, IAA | Morphological trait | LOC_Os12g42020.1 | pinoid | OsPID | Overexpression | Root | |
Morphological trait | LOC_Os05g40770.1 | Leucine-rich-repeat receptor-like kinases | OsRPK1 | Knockdown Overexpression | Root | ||
Leaf/Flag leaf/Shoot, ABA | Morphological trait | LOC_Os02g36570.1 | activity of bc1 complex 1–2 | OsABC1-2 | Mutant | Seed | |
Ubiquitous, JA | Morphological trait | LOC_Os03g03660.1 | calcium-dependent protein kinase 1 | OsCDPK1 | Knockdown Overexpression | Seed | |
Morphological trait | LOC_Os04g48760.1 | xiao | xiao | Mutant | Seed | ||
Ubiquitous, JA | Morphological trait | LOC_Os03g03660.1 | calcium-dependent protein kinase 1 | OsCDPK1 | Knockdown Overexpression | Shoot seedling | |
tZ | Morphological trait | LOC_Os03g20380.1 | Calcineurin B-like protein-interacting protein kinases 31 | oscipk31 | Mutant | Shoot seedling | |
JA | Morphological trait | LOC_Os08g42750.1 | Calcium-dependent protein kinase21 | OsCPK21 | Overexpression | Shoot seedling | |
Morphological trait | LOC_Os02g32610.2 | CONSTITUTIVE TRIPLE-RESPONSE2 | OsCTR2 | Mutant | Shoot seedling | ||
Morphological trait | LOC_Os05g45420.1 | Snf1-related protein kinases 1a | snrk1a | Mutant | Shoot seedling | ||
SAM/Panicle, IAA | Physiological trait | LOC_Os07g32480.1 | Bub1-Related Kinase 1 | BRK1 | Mutant | Sterility | |
RSV, IAA | Physiological trait | LOC_Os01g68870.1 | MULTIPLE SPOROCYTE 1 | msp1 | Mutant | Sterility | |
Root | Physiological trait | LOC_Os07g05620.1 | CBL (Calcineurin B-Like) Interacting Protein Kinase 23 | OsCIPK23 | Knockdown Overexpression | Sterility | |
JA | Physiological trait | LOC_Os09g38850.1 | DEFECT IN EARLY EMBRYO SAC1 | OsDEES1 | Knockdown | Sterility | |
Physiological trait | LOC_Os07g08000.1 | NIMA-related kinase 3 | OsNek3 | Overexpression | Sterility | ||
Physiological trait | LOC_Os04g48760.1 | xiao | xiao | Mutant | Sterility | ||
Anther/Pollen | Physiological trait | LOC_Os02g58610.1 | N-acetylglucosaminyltransferase I | GnTI | Mutant | Source activity | |
Leaf/Flag leaf/Shoot, ABA | Physiological trait | LOC_Os02g36570.1 | activity of bc1 complex 1–2 | OsABC1-2 | Mutant | Source activity | |
Leaf/Flag leaf/Shoot | Physiological trait | LOC_Os05g40180.1 | A serine/threo- nine protein kinase 8 | OsSTN8 | Mutant | Source activity | |
Physiological trait | LOC_Os11g01140.1 | Phototropin1a | phot1a | Mutant | Source activity | ||
Physiological trait | LOC_Os03g57940.1 | earlier flowering1 | el1 | Mutant | Flowering | ||
Physiological trait | LOC_Os03g57940.1 | Heading date 16 | Hd16 | Natural variation | Flowering | ||
Physiological trait | LOC_Os03g55389.1 | heading date 6 | Hd6 | Natural variation | Flowering | ||
Physiological trait | LOC_Os02g40860.1 | Low Temperature Growth 1 | LTG1 | Others | Flowering | ||
Physiological trait | LOC_Os03g56270.1 | NUTRITION RESPONSE AND ROOT GROWTH b | NRRb | Knockdown | Flowering | ||
Physiological trait | LOC_Os02g32610.2 | CONSTITUTIVE TRIPLE-RESPONSE2 | OsCTR2 | Mutant | Flowering | ||
Physiological trait | LOC_Os10g39420.1 | seed-specific protein kinase | SPK | Knockdown | Eating quality | ||
Physiological trait | LOC_Os10g39420.1 | seed-specific protein kinase | SPK | Knockdown | Eating quality | ||
tZ | Physiological trait | LOC_Os03g20380.1 | Calcineurin B-like protein-interacting protein kinases 31 | oscipk31 | Mutant | Germination dormancy | |
Physiological trait | LOC_Os04g12540.1 | lectin receptor kinase | OslecRK | Knockdown | Germination dormancy | ||
Physiological trait | LOC_Os05g45420.1 | Snf1-related protein kinases 1a | snrk1a | Mutant | Germination dormancy | ||
Physiological trait | LOC_Os05g40770.1 | Leucine-rich-repeat receptor-like kinases | OsRPK1 | Knockdown Overexpression | Seed | ||
Physiological trait | LOC_Os05g41090.1 | Ca2 + calmodulin-de-pendent protein kinase | OsCCaMK | Mutant | Root | ||
Physiological trait | LOC_Os02g03410.1 | Ca2 + −dependent protein kinase 4 | OsCPK4 | Overexpression | Root | ||
Root | Physiological trait | LOC_Os05g40770.1 | Leucine-rich-repeat receptor-like kinases | OsRPK1 | Knockdown Overexpression | Culm leaf | |
Physiological trait | LOC_Os02g40860.1 | hybrid breakdown 2 | hbd2 | Natural variation | Lethality | ||
Physiological trait | LOC_Os02g05480.1 | TEY-type rice mitogen-activated protein kinase 3 | OsMPK3 | Others | Others | ||
Cold | Resistance or Tolerance | LOC_Os09g36320.1 | BROAD-SPECTRUM RESISTANCE 1 | BSR1 | Overexpression | Blast resistance | |
Heat, JA | Resistance or Tolerance | LOC_Os07g22710.1 | calcium-dependent protein kinase (CDPK) 18 | CPK18 | Knockdown | Blast resistance | |
Resistance or Tolerance | LOC_Os10g40100.1 | receptor-like cytoplasmic kinase gene | NRRB | Knockdown | Blast resistance | ||
BPH | Resistance or Tolerance | LOC_Os03g06410.1 | accelerated cell death and resistance 1 | OsACDR1 | Knockdown Overexpression | Blast resistance | |
Resistance or Tolerance | LOC_Os03g12730.1 | blast resistance-related 1 | OsBRR1 | Knockdown Overexpression | Blast resistance | ||
JA | Resistance or Tolerance | LOC_Os08g42580.1 | chitin elicitor receptor kinase1 | OsCERK1 | Knockdown | Blast resistance | |
Cold | Resistance or Tolerance | LOC_Os03g57450.1 | Calcium-dependent protein kinase 10 | OsCPK10 | Overexpression | Blast resistance | |
Resistance or Tolerance | LOC_Os04g47300.1 | Calcium-dependent protein kinase 12 | OsCPK12 | Mutant | Blast resistance | ||
Resistance or Tolerance | LOC_Os04g12540.1 | lectin receptor kinase | OslecRK | Knockdown | Blast resistance | ||
Resistance or Tolerance | LOC_Os03g17700.1 | Mitogen-activated protein kinase5 | OsMAPK5 | Knockdown Overexpression | Blast resistance | ||
Resistance or Tolerance | LOC_Os02g05480.1 | TEY-type rice mitogen-activated protein kinase 3 | OsMPK3 | Others | Blast resistance | ||
Cold | Resistance or Tolerance | LOC_Os04g41160.1 | oxidative signal inducible 1 | OsOxi1 | Overexpression | Blast resistance | |
Resistance or Tolerance | LOC_Os01g65230.1 | 3-phosphoinositide-dependent protein kinase 1 | OsPdk1 | Mutant | Blast resistance | ||
Cold | Resistance or Tolerance | LOC_Os04g38480.1 | somatic embryogenesis receptor-like kinase 1 | OsSERK1 | Overexpression | Blast resistance | |
Resistance or Tolerance | LOC_Os06g29810.1 | Pi-d2 | Pi-d2 | Natural variation | Blast resistance | ||
Cold | Resistance or Tolerance | LOC_Os09g36320.1 | BROAD-SPECTRUM RESISTANCE 1 | BSR1 | Overexpression | Bacterial blight resistance | |
BPH | Resistance or Tolerance | LOC_Os03g06410.1 | enhanced disease resistance 1 | OsEDR1 | Mutant | Bacterial blight resistance | |
Resistance or Tolerance | LOC_Os04g12540.1 | lectin receptor kinase | OslecRK | Knockdown | Bacterial blight resistance | ||
Resistance or Tolerance | LOC_Os03g17700.1 | Mitogen-activated protein kinase5 | OsMAPK5 | Knockdown Overexpression | Bacterial blight resistance | ||
Resistance or Tolerance | LOC_Os10g38950.1 | Mitogen-Activated Protein Kinase Phosphatase6 | OsMPK6 | Mutant | Bacterial blight resistance | ||
Cold, JA | Resistance or Tolerance | LOC_Os04g41160.1 | oxidative signal inducible 1 | OsOxi1 | Overexpression | Bacterial blight resistance | |
Resistance or Tolerance | LOC_Os01g65230.1 | 3-phosphoinositide-dependent protein kinase 1 | OsPdk1 | Mutant | Bacterial blight resistance | ||
Resistance or Tolerance | LOC_Os11g35500.1 | Xa21 | Xa21 | Natural variation | Bacterial blight resistance | ||
Resistance or Tolerance | LOC_Os03g17700.1 | Mitogen-activated protein kinase5 | OsMAPK5 | Knockdown Overexpression | Other disease resistance | ||
Resistance or Tolerance | LOC_Os04g12540.1 | lectin receptor kinase | OslecRK | Knockdown | Insect resistance | ||
Cold | Resistance or Tolerance | LOC_Os02g50970.1 | drought-hypersensitive mutant1 | dsm1 | Mutant | Drought tolerance | |
JA | Resistance or Tolerance | LOC_Os03g03660.1 | calcium-dependent protein kinase 1 | OsCDPK1 | Knockdown Overexpression | Drought tolerance | |
Cold | Resistance or Tolerance | LOC_Os04g49510.1 | calcium-dependent protein kinase 7 | OsCDPK7 | Overexpression | Drought tolerance | |
Drought/Salt, M. grisea, ABA | Resistance or Tolerance | LOC_Os01g55450.1 | calcineurin B-like protein-interacting protein kinase12 | OsCIPK12 | Overexpression | Drought tolerance | |
Cold, M. oryzae | Resistance or Tolerance | LOC_Os02g03410.1 | Ca2 + −dependent protein kinase 4 | OsCPK4 | Knockdown | Drought tolerance | |
Resistance or Tolerance | LOC_Os01g10840.1 | glycogen synthase kinase3-like gene 1 | OsGSK1 | Mutant | Drought tolerance | ||
Resistance or Tolerance | LOC_Os03g17700.1 | Mitogen-activated protein kinase5 | OsMAPK5 | Knockdown Overexpression | Drought tolerance | ||
Resistance or Tolerance | LOC_Os06g03970.1 | stress-induced protein kinase gene 1 | sik1 | Mutant | Drought tolerance | ||
Cold | Resistance or Tolerance | LOC_Os04g49510.1 | calcium-dependent protein kinase 7 | OsCDPK7 | Overexpression | Salinity tolerance | |
BPH | Resistance or Tolerance | LOC_Os11g02240.1 | calcineurin B-like protein-interacting protein kinase15 | OsCIPK15 | Overexpression | Salinity tolerance | |
Resistance or Tolerance | LOC_Os07g05620.1 | CBL (Calcineurin B-Like) Interacting Protein Kinase 23 | OsCIPK23 | Knockdown Overexpression | Salinity tolerance | ||
tZ | Resistance or Tolerance | LOC_Os03g20380.1 | Calcineurin B-like protein-interacting protein kinases 31 | oscipk31 | Mutant | Salinity tolerance | |
Resistance or Tolerance | LOC_Os04g47300.1 | Calcium-dependent protein kinase 12 | OsCPK12 | Mutant | Salinity tolerance | ||
JA | Resistance or Tolerance | LOC_Os08g42750.1 | Calcium-dependent protein kinase21 | OsCPK21 | Overexpression | Salinity tolerance | |
Cold, M. oryzae | Resistance or Tolerance | LOC_Os02g03410.1 | Ca2 + −dependent protein kinase 4 | OsCPK4 | Knockdown | Salinity tolerance | |
Resistance or Tolerance | LOC_Os01g10840.1 | glycogen synthase kinase3-like gene 1 | OsGSK1 | Mutant | Salinity tolerance | ||
Resistance or Tolerance | LOC_Os02g05480.1 | Mitogen-activated protein kinase33 | OsMAPK33 | Overexpression | Salinity tolerance | ||
Resistance or Tolerance | LOC_Os03g17700.1 | Mitogen-activated protein kinase5 | OsMAPK5 | Knockdown Overexpression | Salinity tolerance | ||
Resistance or Tolerance | LOC_Os06g05520.1 | mitogen-activated protein kinase kinase | OsMKK1 (MAPKK) | Knockdown | Salinity tolerance | ||
ABA | Resistance or Tolerance | LOC_Os01g64970.1 | SNF1-type serine-threonine protein kinase4 | SAPK4 | Overexpression | Salinity tolerance | |
Resistance or Tolerance | LOC_Os06g03970.1 | stress-induced protein kinase gene 1 | sik1 | Mutant | Salinity tolerance | ||
JA | Resistance or Tolerance | LOC_Os02g42780.1 | Salt Intolerance 1 | SIT1 | Knockdown Overexpression | Salinity tolerance | |
Cold | Resistance or Tolerance | LOC_Os04g44900.1 | Salt Intolerance 2 | SIT2 | Knockdown | Salinity tolerance | |
JA | Resistance or Tolerance | LOC_Os03g03660.1 | calcium-dependent protein kinase 13 | CDPK13 | Overexpression | Cold tolerance | |
JA | Resistance or Tolerance | LOC_Os03g03660.1 | calcium-dependent protein kinase 13 | OsCDPK13 | Overexpression | Cold tolerance | |
tZ | Resistance or Tolerance | LOC_Os03g20380.1 | calcineurin B-like protein-interacting protein kinase03 | OsCIPK03 | Overexpression | Cold tolerance | |
Resistance or Tolerance | LOC_Os01g10840.1 | glycogen synthase kinase3-like gene 1 | OsGSK1 | Mutant | Cold tolerance | ||
Cold | Resistance or Tolerance | LOC_Os03g17700.1 | Mitogen-activated protein kinase5 | OsMAPK5 | Knockdown Overexpression | Cold tolerance | |
Cold, M. oryzae, IAA | Resistance or Tolerance | LOC_Os01g32660.1 | Oryza sativa MAPK kinase 6 | OsMKK6 | Overexpression | Cold tolerance | |
Cold | Resistance or Tolerance | LOC_Os02g50970.1 | drought-hypersensitive mutant1 | dsm1 | Mutant | Other stress resistance | |
ABA | Resistance or Tolerance | LOC_Os02g36570.1 | activity of bc1 complex 1–2 | OsABC1-2 | Mutant | Other stress resistance | |
Heat | Resistance or Tolerance | LOC_Os05g41090.1 | Doesn’t make infection 3 | OsDMI3 | Mutant | Other stress resistance | |
Resistance or Tolerance | LOC_Os01g10840.1 | glycogen synthase kinase3-like gene 1 | OsGSK1 | Mutant | Other stress resistance | ||
Cold | Resistance or Tolerance | LOC_Os04g41160.1 | oxidative signal inducible 1 | OsOxi1 | Overexpression | Other stress resistance | |
tZ | Others | LOC_Os08g34380.1 | commissural vein excessive1 | coe1 | Mutant | Others | |
Cold | Others | LOC_Os08g40170.1 | plant-specific cyclin-dependent kinase2;1 | Orysa;CDKB2;1 | Knockdown | Others | |
Cold, JA | Others | LOC_Os06g06090.1 | Mitogen-activated protein kinase6 | OsMAPK6 | Knockdown | Others |