Recent progress on the genetics and molecular breeding of brown planthopper resistance in rice

Hu, Jie; Xiao, Cong; He, Yuqing

doi:10.1186/s12284-016-0099-0

Rice

Table 3 Markers used in MAS for BPH resistance in rice

From: Recent progress on the genetics and molecular breeding of brown planthopper resistance in rice

Marker	chr	position	QTL/gene	F(5′–3′)	R(5′–3′)	Reference
c3-14	3	35646876	QBph3	GGCAAAATTAGACGGCACG	GAATATGCATTTTGTTTGGAG	Hu et al. 2015a
IN76-2	3	35689799	Bph14	CTGCTGCTGCTCTCGTATTG	CAGGGAAGCTCCAAGAACAG	Du et al. 2009
RM261	4	6579056	Bph15,QBph4.1	CTACTTCTCCCCTTGTGTCG	TGTACCATCGCCAAATCTCC	Hu et al. 2015a
g12140-2	4	6691854	Bph15	ACCAAACACGGTGGATGAGA	AATGGAAAAGAGGAGGACAACAG	Lv et al. 2014
xc4-27	4	6899420	Bph15,QBph4.1	GCATAAGCGCCCTAGCC	GCTAGTTGCAGGCACGC	Hu et al. 2015a
20 M14	4	6900345	Bph15	ATGCTGACGGTGCTAGGAGT	CAGTCCATCCACACAACTTGA	Lv et al. 2014
RH7	4	6949655	Bph17	CTTGCGTTCCGTAGGAGAAG	TGAGTGTAACCCGAAGTGGC	Liu et al. 2015
RHC10	4	6972108	Bph17	CAATACGGGAGATTTGGAGT	TTGGGAAGCATACGAGTGA	Liu et al. 2015
IN156	4	7006594	Bph15, Bph17	AGGTGAAGCTGATGTGCTTG	CGATACTTATTGCAACACAC	Hu et al. 2012
B43	4	8760137	Bph20	ACTCCAATTGGTTCCTGTGG	TGGACTAAAAGCCGATGAGC	Rahman et al. 2009
RM119	4	21414516	Bph6	CATCCCCCTGCTGCTGCTGCTG	CGCCGGATGTGTGGGACTAGCG	Qiu et al. 2010
S00310	6	214474	Bph25	CAACAAGATGGACGGCAAGG	TTGGAAGAAAAGGCAGGCAC	Myint et al. 2012
RM589	6	1381865	Bph3	ATCATGGTCGGTGGCTTAAC	CAGGTTCCAACCAGACACTG	Jairin et al. 2009
RM260	12	19549286	Bph10	ACTCCACTATGACCCAGAG	GAACAATCCCTTCTACGATCG	Ishii et al. 1994
RM313	12	20872949	Bph10	TGCTACAAGTGTTCTTCAGGAC	GCTCACCTTTTGTGTTCCAC	Ishii et al. 1994
RM463	12	22125823	Bph2	TTCCCCTCCTTTTATGGTGC	TGTTCTCCTCAGTCACTGCG	Sun et al. 2006
RM6869	12	22253179	Bph2	GAGCTCCTTGTAGTGACCCG	ATCAGCCTCGCCAGCTTC	Sun et al. 2006
RM6217	12	22671954	Bph9	CGCAGATGGAGATTCTTGAAGG	ACAGCAGCAAGAGCAAGAAATCC	Su et al. 2006
IN187	12	22875241	Bph18,Bph9	GACCCCCTTCGAGTCTAAGAAC	CTTCTTTGAACTCATAGACAG	Hu et al. 2013
7312.T4	12	22885300	Bph18	ACGGCGGTGAGCATTGG	TACAGCGAAAAGCATAAAGAGTC	Jena et al. 2006
RM3331	12	23494476	Bph18	CCTCCTCCATGAGCTAATGC	AGGAGGAGCGGATTTCTCTC	Suh et al. 2011
RM5479	12	24356237	Bph21,Bph26	AACTCCTGATGCCTCCTAAG	TCCATAGAAACAATTTGTGC	Myint et al. 2012
B121	12	24202618	Bph21	CGTCGTACATTCTGAAATGGAG	GGACATGGAGATGGTGGAGA	Rahman et al. 2009

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