Skip to main content

Table 1 Summary of FST genes in rice according to the individual institute in the International Rice Functional Genomics Consortium (IRFGC)

From: Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by dxr mutant having defects in light response

Institute No. of FSTs No. of mapped FSTs No. of FSTs with insertion in genic region (55,986a) No. of genes with FSTs in genic region
DJ-Ds-seq 32,459 32,009 22,002 6,841
Indica-Ds-seq 2,499 2,464 1,539 641
Affjp-Tos17 18,024 17,939 14,554 3,602
Cirad-T-DNA 29,262 27,870 17,709 5,629
csiro-Ds 611 585 398 286
Gsnu-Ds 1,072 1,050 732 484
Ostid-Ds 1,315 1,290 814 672
PFG_FSTs-T-DNA 107,171 105,739 59,707 20,889
rifgp-T-DNA 741 689 359 156
rmd-T-DNA 33,197 31,892 16,219 6,641
ship-T-DNA 12,614 9,385 4,808 1,340
trim-T-DNA 11,799 11,135 6,029 3,711
Ucd-Ds/Dspm 17,730 16,825 7,556 3,088
Total 268,496 258,872 152,426 29,664
  1. aindicates the total number of loci annotated by the rice genome annotation project team (version 7.0)