Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by dxr mutant having defects in light response

Rice

Table 1 Summary of FST genes in rice according to the individual institute in the International Rice Functional Genomics Consortium (IRFGC)

Institute	No. of FSTs	No. of mapped FSTs	No. of FSTs with insertion in genic region (55,986^a)	No. of genes with FSTs in genic region
DJ-Ds-seq	32,459	32,009	22,002	6,841
Indica-Ds-seq	2,499	2,464	1,539	641
Affjp-Tos17	18,024	17,939	14,554	3,602
Cirad-T-DNA	29,262	27,870	17,709	5,629
csiro-Ds	611	585	398	286
Gsnu-Ds	1,072	1,050	732	484
Ostid-Ds	1,315	1,290	814	672
PFG_FSTs-T-DNA	107,171	105,739	59,707	20,889
rifgp-T-DNA	741	689	359	156
rmd-T-DNA	33,197	31,892	16,219	6,641
ship-T-DNA	12,614	9,385	4,808	1,340
trim-T-DNA	11,799	11,135	6,029	3,711
Ucd-Ds/Dspm	17,730	16,825	7,556	3,088
Total	268,496	258,872	152,426	29,664

^aindicates the total number of loci annotated by the rice genome annotation project team (version 7.0)