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Table 2 Nucleotide divergence of OsC1

From: Genetic and Evolutionary Analysis of Purple Leaf Sheath in Rice

Taxon

N

H

Hd

S

Ï€T

θT

Ï€sil

θsil

O. sativa

43

10

0.481

11

0.00104

0.00196

0.00146

0.00206

 spp. indica

23

7

0.522

10

0.00129

0.00208

0.00163

0.00201

  purple leaf sheath

5

4

0.900

7

0.00275

0.00257

0.00325

0.00284

  green leaf sheath

18

3

0.216

3

0.00026

0.00067

0.00016

0.00043

 spp. japonica

20

5

0.442

7

0.00074

0.00152

0.00127

0.00251

  purple leaf sheath

9

5

0.722

7

0.00144

0.00196

0.00246

0.00326

  green leaf sheath

11

2

0.182

1

0.00014

0.00026

0.00027

0.00051

Total numbers of purple leaf sheath

14

8

0.857

9

0.00229

0.00216

0.00336

0.00279

Total numbers of green leaf sheath

29

4

0.200

3

0.00021

0.00059

0.00020

0.00038

A-genome wild rice

7

7

1.000

94

0.02584

0.03478

0.03568

N.A.

A-genome wild rice without O. meridonalis

6

6

1.000

37

0.01283

0.01325

0.01544

0.01612

  1. N total number of sequences, H total number of haplotypes at individual loci in each taxon, H d haplotype diversity, S total number of polymorphic sites, π T average number of pairwise nucleotide difference per site calculated based on the total number of polymorphic sites, θ T Watterson’s estimator of θ per base pair calculated based on the total number of polymorphic sites, π sil average number of pairwise nucleotide difference per site calculated based on silent sites, θ sil Watterson’s estimator of θ per base pair calculated based on silent sites, N.A. Not applicable. When the proportion of differences is higher than 0.75, the Jukes and Cantor correction cannot be computed