Fig. 5
From: Genetic Mapping of Anaerobic Germination-Associated QTLs Controlling Coleoptile Elongation in Rice
Haplotype analysis of candidate QTL in diverse accessions. Haplotypes observed across the 153 accessions using SNPs from a published data set. Five haplotypes were constructed according to 14 SNPs within the 158-kb region (30.923–31.081 Mb) flanking HXK6. There were 49 accessions with ambiguous genotypes, which were grouped into an undefined group. Physical positions of SNPs were based on IRGSP1.0 annotation and subpopulations were defined by principal component analysis. The Fisher’s least significance difference test with Bonferroni’s adjustment was used for multiple comparisons of phenotypic performance