Artificial Selection of Gn1a Plays an Important role in Improving Rice Yields Across Different Ecological Regions

Rice

Table 2 Nucleotide variations in the 5’UTR and CDS of Gn1a

Alleles	−124	−31	−7	161	236	319	353	661	663	664	665	666	667	688	741	781	782	828	885	910	984	1611
A1	A	A	16bp	G	6bp	G	A	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	T
A2	A	A	16bp	C	-	G	G	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	T
A3	A	A	16bp	C	12bp	G	G	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	T
A4	A	A	16bp	C	12bp	T	G	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	T
A5	A	A	16bp	C	12bp	T	G	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	G
A6	A	A	16bp	C	6bp	G	A	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	T
A7	A	A	-	C	12bp	G	G	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	T
A8	G	A	-	C	-	G	G	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	T
A9	A	A	-	C	-	G	G	G	G	A	T	G	G	G	A	G	C	A	G	G	3bp	G
A10	A	A	-	C	-	G	G	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	G
A11	A	A	-	G	6bp	G	A	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	T
A12	A	A	-	C	12bp	G	G	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	G
A13	A	A	-	C	6bp	G	G	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	T
A14	G	A	-	G	6bp	G	A	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	T
A15	G	A	-	C	12bp	T	G	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	T
A16	A	A	-	C	-	G	G	G	G	-	T	G	G	G	C	G	C	C	G	G	3bp	G
A17	A	A	16bp	C	12bp	T	G	G	G	-	T	G	G	G	C	G	C	C	G	G	3bp	G
A18	A	A	16bp	C	12bp	T	G	G	G	A	T	G	G	A	C	G	C	C	G	G	3bp	G
A19	A	A	-	C	-	G	G	G	G	-	T	G	G	G	A	G	C	A	G	G	3bp	G
A20	A	A	-	C	-	G	G	T	C	A	C	C	-	G	A	T	T	A	C	T	3bp	G
A21	A	A	-	C	-	G	G	G	G	A	T	G	G	G	A	G	C	A	G	G	-	G
A22	A	C	-	C	-	G	G	G	G	A	T	G	G	G	C	G	C	C	G	G	3bp	G

The number in the first line indicates the variable sites in the 5’UTR and CDS (excluding the introns). “-” indicated the deletions at the corresponding sites