From: Allele mining and enhanced genetic recombination for rice breeding
Gene name | Locus namea | SNP/deletion associated with phenotypeb | Expected phenotypec | Number of corresponding accessions among 3,000 accessions (%) | Reference | |||||
---|---|---|---|---|---|---|---|---|---|---|
 | LOC_Os07g36940 | 3167 |  |  |  | |||||
tsv1 | T | A | T | G | T | T | S to RTSV | 2,821 (94) | Lee et al. (2010) | |
T | G | T | G | T | T | R to RTSV | 78 (2.6) | |||
T | A | T | G | C | T | R to RTSV | 21 (0.7) | |||
T | A | T | − | − | − | R to RTSV | 52 (1.7) | |||
 |  | Othersd | Uncertain | 28 (0.9) | ||||||
 |  | 727 |  | |||||||
STV11 | LOC_Os11g30910 | G | C | G | G | C | G | S to RSV | 2,798 (93.3) | Wang et al. (2014) |
− | − | − | − | − | − | R to RSV | 10 (0.3) | |||
 |  | Othersd | Uncertain | 192 (6.4) | ||||||
 |  | 925 | ||||||||
RYMV1 | LOC_Os04g42140 | G | A | A | A | T | A | S to RYMV | 3,000 (100) | Albar et al. (2006) |
A | A | A | A | T | A | R to RYMV | 0(0) |