| | | |
Grain length
|
Grain width
|
Grain length to width ratio
|
1000-grain weight
|
|---|
|
Gene name
|
Primer name
|
Variable
|
Parameter estimate
|
T value
|
Parameter estimate
|
T value
|
Parameter estimate
|
T value
|
Parameter estimate
|
T value
|
|---|
|
GS3
|
GS3-PstI
|
GS3-1
|
-0.901±0.17
|
-5.24**
|
0.1169±0.06
|
1.84
|
-0.4724±0.08
|
-5.34**
|
-1.2166±0.94
|
-1.29
|
|
GS3-2
|
-1.4351±0.17
|
-8.17**
|
0.229±0.06
|
3.52**
|
-0.7206±0.09
|
-7 97**
|
-1.9387±0.96
|
-2*
|
|
GS5
|
GS5-TaqI, GS5-SalI
|
GS5-1
|
-
|
-
|
-0.0607±0.05
|
1.15
|
-0.0769±0.07
|
-1.05
|
-
| |
|
GS5-2
|
-
|
-
|
-0.0632±0.07
|
-0.81
|
0.0764±0.1
|
0.7
|
-
| |
|
GS6
|
indel-GS6
|
GS6
|
0.0008±0.12
|
0.01
|
-0.1564±0.04
|
-3.28**
|
0.1532±0.06
|
2.3*
|
-2.4581±0.68
|
-3.59**
|
|
GW2
|
GW2-ScaI
|
GW2
|
-
|
-
|
0.4838±0.16
|
2.87**
|
-
|
-
|
20.9539±2.53
|
8.26**
|
|
qSW5/GW5
|
N1212del
|
qSW5-1
|
0.7148±0.15
|
4.53**
|
-0.4591±0.05
|
-7.89**
|
0.7302±0.08
|
8.99**
|
-
|
-
|
|
qSW5-2
|
0.0862±0.18
|
0.46
|
-0.0188±0.07
|
-0.27
|
0.1054±0.09
|
1.08
|
-
|
-
|
|
GW8/OsSPL16
|
indel-GW8, seq-GW8
|
GW8-1
|
0.5161±0.15
|
3.32**
|
-0.1267±0.05
|
-2.21*
|
0.2907±0.07
|
3.64**
|
0.7881±0.78
|
1
|
|
GW8-2
|
0.2797±0.17
|
1.61
|
-0.2075±0.06
|
-3.24**
|
0.2845±0.08
|
3.18**
|
-1.4489±0.92
|
-1.57
|
| |
intercept
| |
8.7539±0.24
|
35.67**
|
3.2556±0.09
|
35.95**
|
2.7589±0.12
|
21.83**
|
29.4539±0.91
|
32.13**
|
| |
total R
| |
0.4391
|
0.5913
|
0.6339
|
0.3286
|
- ** and * indicate the significance at 1 % and 5 % level, respectively
- A Dummy variable substitution;
-
GS3: A-allele (0,0), B-allele (1,0), and C-allele (0,1)
-
GS5: H94 type (0,0), Zhonghua 11 type (1,0), and Zhenshan 97 type (0,1)
-
GS6: Type I (0) and Type II/III (1)
-
GW2: FAZ1 allele (0) and WY3 allele (1)
-
qSW5/GW5: Indica II type (0,0), Kasalath type (1,0), and Nipponbare type (0,1)
- GW8/OsSPL16: Basmati allele (0,0), HJX74 allele (1,0), and TN1 allele (0,1)
