Table 3 Marker loci associated with grain quality traits commonly detected using QK model
Trait | Marker | DSN0 | DSN90 | DSN180 | WSN0 | WSN45 | WSN90 |
|---|---|---|---|---|---|---|---|
AC | GBSSI-4-IF | 2.20 × 10−15/0.2218 | 7.95 × 10−15/0.2186 | 6.08 × 10−17/0.2497 | 7.22 × 10−18/0.2552 | 1.11 × 10−12/0.1809 | 2.50 × 10−14/0.2014 |
GBSSI-1-IF | 1.13 × 10−26/0.4087 | 5.11 × 10−28/0.4455 | 1.98 × 10−26/0.4114 | 5.20 × 10−29/0.4434 | 3.35 × 10−24/0.3643 | 3.05 × 10−23/0.3436 | |
RM111 | 1.66 × 10−2/0.0448 | 6.58 × 10−3/0.0513 | 1.02 × 10−2/0.0493 | 2.83 × 10−3/0.0531 | 3.47 × 10−3/0.0562 | 2.53 × 10−2/0.0394 | |
SSIIa-IF | 3.88 × 10−2/0.0328 | 3.83 × 10−2/0.033 | 1.61 × 10−2/0.0343 | 3.50 × 10−2/0.0328 | 3.26 × 10−2/0.0307 | ||
GC | GBSSI-4-IF | 4.11 × 10−7/0.0962 | 4.09 × 10−7/0.1094 | 2.85 × 10−2/0.0353 | 3.93 × 10−5/0.0704 | 5.70 × 10−5/0.0762 | 2.34 × 10−3/0.0515 |
SSIIa-IF | 3.01 × 10−4/0.0523 | 2.26 × 10−3/0.0516 | 2.35 × 10−3/0.0528 | 1.93 × 10−2/0.0346 | 1.50 × 10−2/0.0343 | 2.26 × 10−3/0.0539 | |
SSIIaSNP2 | 3.01 × 10−4/0.0459 | 2.26 × 10−3/0.0439 | 1.69 × 10−3/0.0475 | 1.93 × 10−2/0.0261 | 7.53 × 10−3/0.0347 | 2.26 × 10−3/0.0453 | |
SSIIa-F | 3.01 × 10−4/0.0603 | 1.75 × 10−2/0.0447 | 1.66 × 10−2/0.0474 | 3.28 × 10−2/0.0344 | 1.32 × 10−2/0.0471 | ||
RM204 | 9.64 × 10−4/0.0574 | 2.95 × 10−2/0.045 | 1.27 × 10−2/0.0503 | ||||
GL | RGS1 | 1.70 × 10−21/0.3241 | 4.44 × 10−13/0.2000 | 1.27 × 10−17/0.2617 | 3.44 × 10−18/0.2695 | 4.71 × 10−12/0.1752 | 1.30 × 10−7/0.1127 |
RM5436.2 | 1.54 × 10−4/0.0967 | 8.15 × 10−5/0.105 | 9.17 × 10−7/0.1282 | 1.58 × 10−5/0.1111 | 3.13 × 10−2/0.0539 | 2.61 × 10−2/0.0609 | |
RM15206 | 2.97 × 10−5/0.0793 | 2.91 × 10−3/0.0518 | 2.47 × 10−6/0.0842 | 3.89 × 10−7/0.1042 | 1.24 × 10−3/0.0549 | 2.61 × 10−2/0.0348 | |
GBSSII-F | 2.59 × 10−3/0.0408 | 4.15 × 10−3/0.0393 | 9.17 × 10−7/0.0853 | 1.67 × 10−4/0.0539 | 1.38 × 10−2/0.0306 | ||
GBSSII-IF | 5.71 × 10−3/0.0416 | 1.05 × 10−2/0.0412 | 1.68 × 10−6/0.0884 | 5.23 × 10−4/0.0555 | 3.13 × 10−2/0.0306 | ||
RM5499 | 4.48 × 10−3/0.0593 | 6.23 × 10−6/0.1098 | 2.01 × 10−6/0.1036 | 9.48 × 10−5/0.0841 | 2.10 × 10−2/0.047 | ||
RM16 | 5.71 × 10−3/0.0550 | 3.64 × 10−2/0.0459 | 1.26 × 10−2/0.0449 | 8.32 × 10−3/0.0503 | |||
RM18751 | 1.26 × 10−2/0.0327 | 1.42 × 10−2/0.0341 | 1.65 × 10−2/0.0368 | 2.61 × 10−2/0.0341 | |||
SSI-2-IF | 7.48 × 10−3/0.0311 | 2.74 × 10−3/0.0342 | 5.15 × 10−3/0.0323 | 6.47 × 10−3/0.0355 | |||
RMw513 | 2.89 × 10−2/0.0488 | 2.74 × 10−3/0.0618 | 1.83 × 10−3/0.067 | ||||
GW | RGS1 | 4.28 × 10−8/0.1211 | 2.09 × 10−4/0.0679 | 8.96 × 10−7/0.1046 | 3.53 × 10−7/0.1087 | 5.67 × 10−5/0.0733 | 4.95 × 10−3/0.0498 |
RMw513 | 1.58 × 10−4/0.0898 | 4.60 × 10−4/0.0839 | 1.92 × 10−6/0.1216 | 1.57 × 10−6/0.1213 | 5.67 × 10−5/0.0985 | 8.31 × 10−4/0.0857 | |
Indel1 | 1.81 × 10−4/0.0651 | 1.32 × 10−4/0.0739 | 1.58 × 10−3/0.0551 | 2.98 × 10−3/0.0498 | 2.99 × 10−2/0.033 | ||
RM21945 | 6.60 × 10−3/0.051 | 2.99 × 10−3/0.0572 | 6.13 × 10−3/0.0518 | 7.37 × 10−3/0.0506 | |||
RM21950 | 1.39 × 10−4/0.0705 | 1.32 × 10−4/0.073 | 5.44 × 10−3/0.0465 | 2.98 × 10−3/0.0511 | |||
SSI-2-IF | 1.17 × 10−2/0.0304 | 1.29 × 10−2/0.0303 | 1.27 × 10−2/0.0299 | 2.89 × 10−2/0.0263 | |||
RM21964 | 7.21 × 10−3/0.0494 | 1.64 × 10−2/0.045 | 1.29 × 10−2/0.0389 | ||||
RM18360 | 1.17 × 10−2/0.0382 | 1.43 × 10−2/0.0373 | 8.91 × 10−3/0.0407 | ||||
LWR | RGS1 | 2.44 × 10−16/0.236 | 2.27 × 10−9/0.1433 | 9.44 × 10−13/0.1892 | 3.84 × 10−14/0.206 | 1.13 × 10−9/0.1402 | 1.26 × 10−5/0.0874 |
RMw513 | 6.58 × 10−4/0.0759 | 5.07 × 10−3/0.0673 | 2.45 × 10−5/0.1053 | 5.21 × 10−6/0.1132 | 9.74 × 10−4/0.0781 | 4.65 × 10−3/0.0705 | |
Indel1 | 1.27 × 10−5/0.0811 | 1.60 × 10−4/0.0722 | 6.99 × 10−5/0.0728 | 4.09 × 10−4/0.060 | 4.20 × 10−3/0.0441 | 4.13 × 10−2/0.0334 | |
RM15206 | 6.62 × 10−4/0.0537 | 1.12 × 10−2/0.0408 | 2.38 × 10−4/0.0642 | 9.68 × 10−6/0.0827 | 2.82 × 10−3/0.0485 | 2.19 × 10−2/0.0395 | |
SSI-2-IF | 2.26 × 10−3/0.0365 | 2.27 × 10−3/0.0386 | 2.46 × 10−3/0.0376 | 4.04 × 10−3/0.0367 | |||
RM21945 | 1.69 × 10−3/0.0548 | 5.89 × 10−3/0.0525 | 1.41 × 10−3/0.0605 | 2.46 × 10−3/0.0534 | |||
RM21950 | 1.07 × 10−4/0.0667 | 8.32 × 10−4/0.0603 | 2.26 × 10−3/0.0483 | 1.04 × 10−3/0.0535 | |||
RM5436.2 | 6.12 × 10−3/0.0629 | 1.36 × 10−3/0.0834 | 1.91 × 10−3/0.0765 | 2.46 × 10−3/0.0728 | |||
RM5499 | 1.52 × 10−2/0.0513 | 2.58 × 10−2/0.0434 | 1.48 × 10−2/0.0482 | ||||
GBSSII-F | 4.76 × 10−2/0.0175 | 4.3 × 10−2/0.0347 | 2.35 × 10−2/0.0240 | ||||
RM16 | 1.34 × 10−2/0.0463 | 3.87 × 10−2/0.0404 | 4.13 × 10−2/0.0454 | ||||
DEC | SSIIa-F | 6.08 × 10−7/0.1061 | 1.39 × 10−4/0.0791 | 5.38 × 10−5/0.0896 | 5.92 × 10−7/0.1066 | 8.73 × 10−6/0.0867 | 1.55 × 10−5/0.0888 |
SSIIa-IF | 3.24 × 10−8/0.1223 | 1.39 × 10−4/0.0737 | 2.88 × 10−4/0.0626 | 1.84 × 10−10/0.1535 | 1.65 × 10−6/0.0901 | 1.40 × 10−8/0.1297 | |
SSIIaSNP2 | 4.91 × 10−7/0.0905 | 2.17 × 10−4/0.0552 | 1.88 × 10−4/0.0588 | 1.19 × 10−8/0.1121 | 1.65 × 10−6/0.080 | 8.64 × 10−7/0.0894 | |
RMw513 | 1.98 × 10−2/0.0501 | 2.82 × 10−4/0.0847 | 3.81 × 10−4/0.0806 | 1.52 × 10−2/0.0529 | 2.44 × 10−2/0.0412 | 4.16 × 10−2/0.0489 | |
RM18068 | 4.64 × 10−4/0.070 | 3.27 × 10−4/0.0755 | 1.16 × 10−2/0.0503 | 1.15 × 10−4/0.0814 | 4.79 × 10−2/0.0282 | 3.43 × 10−2/0.0455 | |
GBSSI-1-IF | 3.67 × 10−6/0.0849 | 5.47 × 10−3/0.0402 | 1.02 × 10−3/0.0528 | 5.16 × 10−3/0.0379 | 8.08 × 10−4/0.0561 | ||
GBSSI-3-IF | 4.74 × 10−4/0.0545 | 2.77 × 10−2/0.0292 | 1.52 × 10−2/0.0346 | 9.46 × 10−3/0.033 | |||
RI02451 | 8.25 × 10−4/0.0507 | 3.40 × 10−3/0.0444 | 1.01 × 10−2/0.0386 | 4.61 × 10−4/0.0525 | |||
PGWC | SSIIa-F | 8.22 × 10−9/0.1277 | 4.11 × 10−6/0.0993 | 6.33 × 10−4/0.069 | 5.04 × 10−9/0.1323 | 3.83 × 10−6/0.0957 | 1.35 × 10−7/0.1162 |
SSIIa-IF | 1.88 × 10−12/0.1761 | 1.49 × 10−7/0.1141 | 6.63 × 10−5/0.0779 | 2.99 × 10−13/0.1896 | 6.11 × 10−8/0.1171 | 1.17 × 10−10/0.1575 | |
SSIIaSNP2 | 2.94 × 10−10/0.1288 | 1.49 × 10−7/0.1003 | 6.63 × 10−5/0.0657 | 9.58 × 10−11/0.1347 | 4.80 × 10−7/0.0897 | 7.79 × 10−9/0.1152 | |
GBSSI-1-IF | 1.01 × 10−6/0.089 | 3.13 × 10−2/0.0337 | 4.48 × 10−5/0.0689 | 8.57 × 10−3/0.0409 | 2.22 × 10−4/0.0625 | ||
GBSSI-3-IF | 1.81 × 10−4/0.0583 | 4.60 × 10−2/0.0308 | 2.23 × 10−2/0.0316 | 4.28 × 10−2/0.0284 | |||
RM18068 | 8.29 × 10−3/0.0486 | 2.72 × 10−4/0.0781 | 3.52 × 10−3/0.0622 | 3.60 × 10−3/0.0553 | |||
RGS1 | 9.21 × 10−3/0.0351 | 1.97 × 10−3/0.0462 | 3.72 × 10−2/0.0304 | ||||
RI02451 | 8.03 × 10−3/0.0371 | 4.93 × 10−3/0.045 | 4.01 × 10−2/0.0302 |