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Table 2 Distribution of the unique primers and InDels on rice chromosomes

From: Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice

Chromosome Chromosome length (bp) Unique primerb InDeld
Count Densityf Count Densityf
1 43270923 1,175,638 27.17 299,457 6.92
2 35937250 1,011,186 28.14 259,989 7.23
3 36413819 1,046,792 28.75 262,345 7.20
4 35502694 777,218 21.89 196,803 5.54
5 29958434 728,667 24.32 190,707 6.37
6 31248787 754,761 24.15 200,616 6.42
7 29697621 733,083 24.68 191,446 6.45
8 28443022 604,746 21.26 158,366 5.57
9 23012720 555,769 24.15 146,065 6.35
10 23207287 496,144 21.38 129,305 5.57
11 29021106 562,780 19.39 150,050 5.17
12 27531856 549,143 19.95 144,395 5.24
Total 373245519 8,995,927 285.24 2,329,544 74.04
Average 31103793.25 749,660.58 24.10 194,128.67 6.24
  1. bPrimer pairs simultaneously mapped to unique genomic regions in both Nipponbare and 9311
  2. dInDels with PIC > 0
  3. fDensity was defined as the corresponding primer or InDel number every 1000 bp