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Table 6 Germplasm accessions used in the study

From: Analysis of Population Structure and Genetic Diversity in Rice Germplasm Using SSR Markers: An Initiative Towards Association Mapping of Agronomic Traits in Oryza Sativa

G. no.

Genotype

Parentage

Origin

Type – traditional/Improved

Subtype

Ecosystem IR = irrigated, RL = rainfed lowland; UP = upland

Maturity class: E = early, M = medium, L = late;

Donors/Original providing country

RG1

Mapillai samba

Landrace

Tamil Nadu, India

T

indica

IR

L

India

RG2

CK 275

CO50 X KAVUNI

Tamil Nadu, India

I

indica

IR

L

India

RG3

Senkar

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG4

Murugankar

Landrace

Tamil Nadu, India

T

indica

UP

L

India

RG5

CHIR 6

Improved chinsurah

West Bengal

I

indica

IR

E

India

RG6

CHIR 5

Improved chinsurah

West Bengal

I

indica

IR

E

India

RG7

Kudai vazhai

Landrace

Tamil Nadu, India

T

indica

UP

E

India

RG8

CHIR 8

Improved chinsurah

West Bengal

I

indica

IR

E

India

RG9

Kuruvai kalanjiyam

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG10

Nava konmani

Landrace

Tamil Nadu, India

T

indica

RL

M

India

RG11

CHIR 10

Improved chinsurah

West Bengal

I

indica

IR

M

India

RG12

Vellai chithiraikar

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG13

CHIR 2

Improved chinsurah

West Bengal

I

indica

IR

M

India

RG14

Jyothi

Variety

Kerala, India

T

indica

IR

E

India

RG15

Palkachaka

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG16

Thooyala

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG17

Chivapu chithiraikar

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG18

CHIR 11

Improved chinsurah

West Bengal

I

indica

IR

M

India

RG19

Koolavalai

Landrace

Tamil Nadu, India

T

indica

RL

M

India

RG20

Kalvalai

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG21

Mohini samba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG22

IR 36

IR 1561 X IR 24 X Oryza nivara x CR 94

IRRI, Philippines

I

indica

IR

E

Philippines

RG23

Koombalai

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG24

Tadukan

Landrace

Philippines

T

indica

UP

M

Philippines

RG25

Sorna kuruvai

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG26

Rascadam

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG27

Muzhi karuppan

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG28

Kaatukuthalam

Landrace

Tamil Nadu, India

T

indica

RL

M

India

RG29

Vellaikattai

Landrace

Tamil Nadu, India

T

indica

RL

M

India

RG30

Poongar

Landrace

Tamil Nadu, India

T

indica

RL

L

India

RG31

Chinthamani

Landrace

Tamil Nadu, India

T

indica

RL

M

India

RG32

Thogai samba

Landrace

Tamil Nadu, India

T

indica

RL

M

India

RG33

Malayalathan samba

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG34

RPHP125

NDR 2026 (RICHA)

UTTAR PRADHESH

I

indica

IR

E

India

RG35

CK 143

CO50 X KAVUNI

Tamil Nadu, India

I

indica

IR

L

India

RG36

Kattikar

Landrace

Tamil Nadu, India

T

indica

RL

M

India

RG37

Shenmolagai

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG38

Velli samba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG39

Kaatu ponni

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG40

kakarathan

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG41

Godavari samba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG42

Earapalli samba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG43

RPHP 129

Kamad

JAMMU & KASHMIR

T

indica

Scented

E

India

RG44

Mangam samba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG45

RPHP 105

Moirang phou

MANIPUR

T

indica

IR

E

India

RG46

IG 4(EC 729639- 121695)

TD2: :IRGC 9148-1

IRRI, Philippines

I

indica

IR

M

Philippines

RG47

Machakantha

Landrace

Orissa, India

T

indica

scented

E

India

RG48

Kalarkar

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG49

Valanchennai

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG50

Sornavari

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG51

RPHP 134

NJAVARA

Kerala

T

indica

RL

E

India

RG52

ARB 58

Variety

Karnataka

I

indica

IR

E

India

RG53

IR 68144-2B-2-2-3-1-127

IR 72 X ZAWA BONDAY

IRRI, Philippines

I

indica

 

E

Philippines

RG54

PTB 19

Variety

Kerala, India

I

indica

IR

M

India

RG55

IG 67(EC 729050- 120988)

IR 77384-12-35-3-12-l-B::IRGC 117299-1

IRRI, Philippines

I

indica

IR

E

Philippines

RG56

RPHP 59

Taroari Basmati/karnal local

HARYANA

T

Aromatic

scented

L

India

RG57

RPHP 103

Pant sugandh dhan -17

UTTARKHAND

I

Aromatic

scented

L

India

RG58

Kodaikuluthan

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG59

RPHP 68

Subhdra

Orissa, India

I

indica

RL

E

India

RG60

Rama kuruvaikar

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG61

Kallundai

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG62

Purple puttu

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG63

IG 71(EC 728651- 117588)

TEPI BORO::IRGC 27519-1

IRRI, Philippines

I

aus

IR

E

Philippines

RG64

Ottadaiyan

Landrace

Tamil Nadu, India

T

indica

RL

M

India

RG65

IG 56(EC 728700- 117658

BICO BRANCO

Brazil

T

Aromatic

UP

E

Philippines

RG66

Jeevan samba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG67

RPHP 106

akut phou

MANIPUR

I

indica

IR

M

India

RG68

IG 63(EC 728711- 117674)

CAAWA/FORTUNA

IRRI, Philippines

I

Tropical Japonica

IR

M

Philippines

RG69

RPHP 48

Bindli

UTTARKHAND

T

Aromatic

Scented

L

India

RG70

Karthi samba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG71

IG 27(IC 0590934- 121255)

ARC 11345::IRGC 21336-1

IRRI, Philippines

I

indica

IR

M

Philippines

RG72

Aarkadu kichili

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG73

Kunthali

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG74

ARB 65

Variety

Karnataka

I

indica

IR

E

India

RG75

IG 21(EC 729334- 121355)

HONGJEONG::IRGC 73052-1

IRRI, Philippines

I

japonica

IR

E

Philippines

RG76

Matta kuruvai

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG77

Karuthakar

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG78

RPHP 165

Tilak kachari

West Bengal

T

indica

IR

E

India

RG79

Manavari

Landrace

Tamil Nadu, India

T

indica

U

E

India

RG80

IG 66(EC 729047- 120985)

IR 71137-243-2-2-3-3::IRGC 99696-1

IRRI, Philippines

I

indica

IR

E

Philippines

RG81

CB-07-701-252

White ponni X Rasi

Tamil Nadu, India

I

indica

IR

E

India

RG82

Thooyamalli

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG83

RPHP 93

Type-3 (Dehradooni Basmati)

UTTARKHAND

I

indica

Scented

M

India

RG84

Velsamba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG85

RPHP 104

Kasturi (IET 8580)

UTTARKHAND

I

indica

IR

M

India

RG86

RPHP 102

Kanchana

Kerala, India

I

indica

Semi Deep Water

L

India

RG87

IG 40(EC 728740- 117705)

DEE GEO WOO GEN

TAIWAN

T

Indica

IR

M

Philippines

RG88

Saranga

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG89

IR 83294-66-2-2-3-2

DAESANBYEO X IR65564-44-5-1

IRRI, Philippines

I

japonica

RL

M

Philippines

RG90

IG 61(EC 728731- 117696)

CRIOLLO LA FRIA

Venezuela

I

Indica

IR

E

Philippines

RG91

IG 23(EC 729391- 121419)

MAHA PANNITHI::IRGC 51021-1

IRRI, Philippines

I

Aus

IR

M

Philippines

RG92

IG 49(EC 729102- 121052)

MENAKELY ::IRGC 69963-1

Madagascar

I

Indica

RL

M

Philippines

RG93

Uppumolagai

Landrace

Tamil Nadu, India

T

Indica

IR

M

India

RG94

Karthigai samba

Landrace

Tamil Nadu, India

T

Indica

RL

M

India

RG95

Jeeraga samba

Landrace

Tamil Nadu, India

T

Indica

IR

M

India

RG96

RP-BIO-226

IMPROVED SAMBHA MAHSURI

ANDHRA PRADESH

I

Indica

IR

M

India

RG97

Varigarudan samba

Landrace

Tamil Nadu, India

T

Indica

IR

M

India

RG98

IG 5(EC 729642- 121698)

IR 65907-116-1-B::C1

IRRI, Philippines

I

japonica

UP

E

Philippines

RG99

IG 31(EC 728844- 117829)

ORYZICA LLANOS 5

Colombia

T

Indica

IR

M

Philippines

RG100

IG 7(EC 729598- 121648)

VARY MAINTY::IRGC 69910-1

Madagascar

I

japonica

IR

M

Philippines

RG101

RPHP 52

SEBATI

Orissa, India

I

Indica

IR

M

India

RG102

Varakkal

Landrace

Tamil Nadu, India

T

Indica

UP

E

India

RG103

Mattaikar

Landrace

Tamil Nadu, India

T

Indica

RL

L

India

RG104

IG 53(EC 728752- 117719)

CAROLINA RINALDO BARSANI

URUGUAY

I

Temperate japonica

IR

E

Philippines

RG105

IG 6(EC 729592- 121642)

SOM CAU 70 A::IRGC 8227-1

Vietnam

I

Temperate japonica

IR

E

Philippines

RG106

Katta samba

Landrace

Tamil Nadu, India

T

Indica

RL

L

India

RG107

RH2-SM-1-2-1

SWARNA X MOROBERAKAN

Tamil Nadu, India

I

Indica

IR

E

India

RG108

Red sirumani

Landrace

Tamil Nadu, India

T

Indica

RL

E

India

RG109

Vadivel

Landrace

Tamil Nadu, India

T

Indica

IR

M

India

RG110

Norungan

Landrace

Tamil Nadu, India

T

Indica

RL

E

India

RG111

IG 20(EC 729293- 121310)

CHIGYUNGDO::IRGC 55466-1

South Korea

I

Indica

UP

E

Philippines

RG112

IG 35(EC 728858- 117843)

PATE BLANC MN 1

Cote D’Ivoire

I

japonica

UP

M

Philippines

RG113

IG 45(EC 728768- 117736)

FORTUNA

Puerto Rico

T

japonica

IR

M

Philippines

RG114

RPHP 159

Radhuni Pagal

BANGLADESH

I

aromatic rice

Scented

L

India

RG115

IG 43(EC 728788- 117759)

IR-44595

IRRI, Philippines

I

indica

IR

E

Philippines

RG116

RPHP 27

Azucena

IRRI, Philippines

T

Tropical Japonica

RL

E

India

RG117

IG 65(EC 729024- 120958)

GODA HEENATI::IRGC 31393-1

SRILANKA

I

indica

IR

E

Philippines

RG118

Ponmani samba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG119

Ganthasala

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG120

Thattan samba

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG121

IG 74(EC 728622- 117517)

KINANDANG PATONG::IRGC 23364-1

IRRI, Philippines

I

japonica

RL

M

Philippines

RG122

Kaliyan samba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG123

IG 2(EC 729808-121874)

BLUEBONNET 50::IRGC 1811-1

IRRI, Philippines

I

japonica

UP

M

Philippines

RG124

IG 29(EC 728925- 117920)

TOX 782-20-1

NIGERIA

T

Tropical Japonica

IR

E

Philippines

RG125

RPHP 55

Kalinga -3

Orissa

I

indica

RL

E

India

RG126

Kallimadayan

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG127

IG 10(EC 729686- 121743)

HASAN SERAI

IRRI, Philippines

I

aromatic

IR

E

Philippines

RG128

IG 75(EC 728587- 117420)

AEDAL::IRGC 55441-1

Korea

T

japonica

IR

E

Philippines

RG129

IG 38(EC 728742 - 117707)

DELREX

UNITED STATES

 

Tropical japonica

IR

M

Philippines

RG130

IG 39(EC 728779- 117750)

HONDURAS

HONDURAS

 

indica

IR

M

Philippines

RG131

RPHP 90

182(M)

Andhra Pradesh

I

indica

IR

E

India

RG132

IG 33(EC 728938- 117935)

WC 3397

JAMAICA

 

Tropical Japonica

IR

E

Philippines

RG133

IG 42(EC 728798- 117774)

KALUBALA VEE

SRILANKA

T

indica

IR

E

Philippines

RG134

IG 9(EC 729682- 121739)

GEMJYA JYANAM::IRGC 32411-C1

IRRI, Philippines

I

indica

IR

E

Philippines

RG135

RPHP 161

Champa Khushi

Vietnam

T

indica

UP

E

India

RG136

IG 8(EC 729601- 121651)

XI YOU ZHAN::IRGC 78574-1

China

I

indica

IR

E

Philippines

RG137

IG 37(EC 728715- 117678)

CENIT

ARGENTINA

T

Tropical Japonica

IR

L

Philippines

RG138

Sigappu kuruvikar

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG139

RPHP 138

EDAVANKUDI POKKALI

Kerala, India

T

indica

Deep water

L

India

RG140

Raja mannar

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG141

IG 44(EC 728762- 117729)

EDITH

UNITED STATES

T

indica

IR

E

Philippines

RG142

Sasyasree

TKM 6 x IR 8

West Bengal

I

indica

IR

E

India

RG143

IG 46(IC 471826- 117647)

BABER

INDIA

I

indica

IR

E

India

RG144

Chetty samba

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG145

IG 60(EC 728730- 117695)

CREOLE

Belize

T

indica

IR

M

Philippines

RG146

IR 75862-206

IR 75083 X IR 65600 -81-5-3-2

IRRI, Philippines

I

Tropical Japonica

IR

M

Philippines

RG147

IG 58(EC 728725- 117689)

CI 11011

UNITED STATES

 

japonica

IR

M

Philippines

RG148

Chinna aduku nel

Landrace

Tamil Nadu, India

T

indica

IR

L

India

RG149

RH2-SM-2-23

SWARNA X MOROBERAKAN

Tamil Nadu, India

I

indica

IR

M

India

RG150

IG 14(IC 517381- 121422)

MALACHAN::IRGC 54748-1

India

I

indica

UP

E

Philippines

RG151

IG 32(EC 728838- 117823)

NOVA

United States

I

japonica

IR

M

Philippines

RG152

RPHP 47

Pathara (CO-18 x Hema)

India

I

indica

IR

E

India

RG153

Sembilipiriyan

Landrace

Tamil Nadu, India

T

indica

RL

M

India

RG154

IG 48(EC 729203- 121195)

DINOLORES::IRGC 67431-1

IRRI, Philippines

I

indica

UP

M

Philippines

RG155

Sona mahsuri

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG156

IG 12(EC 729626- 121681)

SHESTAK::IRGC 32351-1

Iran

I

indica

IR

E

Philippines

RG157

Karungan

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG158

IG 13(EC 729640- 121696)

CURINCA::C1

BRAZIL

I

indica

IR

E

Philippines

RG159

Sembala

Landrace

Tamil Nadu, India

T

indica

IR

L

India

RG160

IG 72(EC 728650- 117587)

TD 25::IRGC 9146-1

Thailand

I

indica

IR

M

Philippines

RG161

Panamarasamba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG162

IR 64

IR-5857-33-2-1 x IR-2061-465-1-5-5

IRRI, Philippines

I

indica

IR

E

Philippines

RG163

Mikuruvai

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG164

Thillainayagam

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG165

ARB 64

Variety

Karnataka

I

indica

IR

E

India

RG166

RPHP 140

VYTILLA ANAKOPON

Kerala

T

indica

IR

E

India

RG167

IG 70(EC 729045- 120983)

IR43::IRGC 117005-1

IRRI, Philippines

I

indica

IR

M

Philippines

RG168

Haladichudi

Landrace

Orissa, India

T

indica

IR

E

India

RG169

IG 24(EC 728751- 117718)

DNJ 140

BANGLADESH

I

Aus

IR

E

Philippines

RG170

RPHP 42

Salimar Rice -1

JAMMU & KASHMIR

I

indica

IR

M

India

RG171

RPHP 44

BR- 2655

KARNATAKA

I

indica

IR

L

India

RG172

IG 25(EC 729728- 121785)

LOHAMBITRO 224::GERVEX 5144-C1

Madagascar

I

Tropical Japonica

IR

E

Philippines

RG173

IG 73(EC 728627- 117527)

MAKALIOKA 34::IRGC 6087-1

IRRI, Philippines

I

indica

IR

E

Philippines

RG174

IG 51(EC 728772- 117742)

GOGO LEMPUK

Indonesia

 

Tropical Japonica

IR

M

Philippines

RG175

Vellai kudaivazhai

Landrace

Tamil Nadu, India

T

indica

RL

M

India

RG176

Kodai

Landrace

Tamil Nadu, India

T

indica

RL

E

India

RG177

Kallundaikar

Landrace

Tamil Nadu, India

T

indica

UP

M

India

RG178

IG 17(EC 728900- 117889)

SIGADIS

INDONESIA

T

indica

RL

L

Philippines

RG179

Avasara samba

Landrace

Tamil Nadu, India

T

indica

IR

E

India

RG180

IG 59(EC 728729- 117694)

COPPOCINA

BULGARIA

I

Tropical Japonica

IR

M

Philippines

RG181

IG 52(EC 728756- 117723)

DOURADO AGULHA

BRAZIL

I

Tropical Japonica

IR

M

Philippines

RG182

ARB 59

Variety

Karnataka

I

indica

IR

E

India

RG183

RPHP 163

Seeta sail

West Bengal

T

indica

Scented

M

India

RG184

IG 18(EC 728892- 117880)

SERATOES HARI

INDONESIA

T

indica

IR

E

Philippines

RG185

RPHP 36

TKM-9

Tamil Nadu, India

I

indica

IR

E

India

RG186

IG 28(EC 728920- 117914)

TIA BURA

INDONESIA

T

Tropical Japonica

IR

M

Philippines

RG187

Vadakathi samba

Landrace

Tamil Nadu, India

T

indica

IR

M

India

RG188

RPHP 80

24(K)

Andhra Pradesh

I

indica

IR

E

India

RG189

IG 41(EC 728800- 117776)

KANIRANGA

Indonesia

T

Tropical japonica

IR

M

Philippines

RG190

IG 26(IC 0590943- 121899)

BASMATI 370::IRGC 3750-1

IRRI, Philippines

I

aromatic

IR

E

Philippines

RG191

IG 15(EC 728910- 117901)

SZE GUEN ZIM

CHINA

I

indica

IR

E

Philippines

RG192

Nootri pathu

Landrace

Tamil Nadu, India

T

indica

RL

L

India

  1. IRRI lines - The number after hyphen inside brackets represent IRGC number