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Fig. 2 | Rice

Fig. 2

From: Phylogenomics databases for facilitating functional genomics in rice

Fig. 2

Snapshots from homepage for rice kinase database showing phylogenomics data for cyclin dependent kinase (CDK) subfamily using Tree viewer tool. At Rice kinase database (RKD) homepage (a), we clicked Tree viewer option and moved to RKD Tree viewer website (b). This website consists of two parts: Kinase subfamilies and integrating data sections. After then, we selected CDK CMGC_1) from kinase subfamilies, MSU/TIGR V7 Model from sequence information, Zea mays and Arabidopsis thaliana from orthologs in plants, transmembrane domain from topology, NIAS Tos17 KO line from mutants, and show average and heatmap of Affymetrix GSE4438 dataseries (c). The scale bar for single channel array data from 7 to 13 log2 transformed intensity value was applied. Yellow color indicates the high level of expression and blue one indicates the low level

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