Laser microdissection-based gene expression analysis in the aleurone layer and starchy endosperm of developing rice caryopses in the early storage phase

Ishimaru, Tsutomu; Ida, Masashi; Hirose, Sakiko; Shimamura, Satoshi; Masumura, Takehiro; Nishizawa, Naoko K.; Nakazono, Mikio; Kondo, Motohiko

doi:10.1186/s12284-015-0057-2

Rice

Table 3 Information on the genes related to carbon fixation, TCA cycle, oxidative phosphorylation and GS/GOGAT cycle

From: Laser microdissection-based gene expression analysis in the aleurone layer and starchy endosperm of developing rice caryopses in the early storage phase

Category	Accession No.	Description	Reference
Carbon fixation	AK059261	Acetyl CoA carboxylase	RAP-DB^a; Similar to Acetyl-coenzyme A carboxylase. (Os05t0295300-01)
	AF271995	Phosphoenolpyruvate carboxylase 1	Osppc1; Yamamoto et al. 2014
TCA cycle	AF302906	Citrate synthase	NCBI^b; Silva et al. Unpublished.
	AK067183	Aconitase	RAP-DB^a; Similar to Aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase). (Os03t0136900-01). Similar to Aconitate hydratase 2, mitochondrial. (Os03t0136900-02)
	AF155333	NADP-isocitrate dehydrogenase	Koyama et al. 1999
	AK100482	Oxoglutarate dehydrogenase	RAP-DB^a; Similar to 2-oxoglutarate dehydrogenase, E1 component. (Os07t0695800-01)
	AK103525	Succinyl-CoA synthetase	RAP-DB^a; Similar to Succinyl-CoA synthetase, beta chain. (Os02t0621700-01)
	AB017428	Succinate dehydrogenase	SDHB; Kubo et al. 1999b
	AF444195	Malate dehydrogenase 1	MDH; Lin et al. 2003
	AK073698	Malate dehydrogenase 2	RAP-DB^a; Similar to Malate dehydrogenase. (Os05t0574400-01)
Oxidative phosphorylation	AK058713	NADH-ubiquinone oxidoreductase	RAP-DB^a; Similar to NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor. (Os03t0713400-01); Similar to NADH-ubiquinone oxidoreductase 75 kDa subunit. (Os03t0713400-02); Similar to NADH-ubiquinone oxidoreductase 75 kDa subunit. (Os03t0713400-03)
	AK243655	NADH-ubiquinone oxidoreductase subunit PSST	RAP-DB^a; NADH-ubiquinone oxidoreductase subunit PSST (Fragment). (Os05t0533700-01)
	AK119716	Cytochrome b-c1 complex subunit 8	RAP-DB^a; Similar to Cytochrome b-c1 complex subunit 8. (Os06t0175900-01)
GS/GOGAT cycle	Y12594	Ferredoxin-dependent glutamate synthase (Fd-GOGAT)	OsGog1; Mattana et al. Unpublished^b.
	X14245	Cytosolic glutamine synthetase 1;1	GS1; Sakamoto et al. 1989, GS1;1; Tabuchi et al. 2005
	X14244	Cytosolic glutamine synthetase 1;2	GSr; Sakamoto et al. 1989, GS1;2; Tabuchi et al. 2005
	AB008845	NADH dependent Glutamate Synthase	Goto et al. 1998
	AY332470	Glutamate dehydrogenase	OsGDH1.2; Qiu et al. 2009

^aThe Rice Annotation Project Database
^bDirect submission to The National Center for Biotechnology Information (NCBI)

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