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Table 1 Functional classification of differentially expressed genes identified by the microarray analysis

From: Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance

Function type

spl5 -FL

spl5 -ML

a Common

Up

Down

Up

Down

Up

Down

Defense response

16

4

33

12

15

3

Oxidation-reduction process

13

6

33

35

12

5

Response to stress

5

1

14

5

4

1

Cellular amino acid metabolic process

6

2

15

6

6

1

Cellular cell wall/membrance organization

4

0

4

5

4

0

Hormone-mediated signaling pathway

4

2

8

10

4

0

Fatty acid biosynthetic process

7

3

12

10

6

1

Development

3

0

7

8

3

0

Carbohydrate metabolic process

4

1

16

18

4

1

Transport

6

3

17

21

6

2

ATP biosynthetic process

5

1

8

6

4

0

Photosynthesis

1

1

5

23

1

1

RNA/DNA

9

3

25

22

9

1

Apoptosis

1

0

2

0

1

0

Transcription factor

5

0

16

10

5

0

Kinase

11

5

32

14

10

3

Signal transduction

5

0

14

4

4

0

Protein modification process

6

0

15

15

6

0

Metal ion

2

2

3

7

2

2

Others

15

4

54

78

12

3

Unknow

48

29

112

142

43

23

Total

176

67

445

451

161

47

  1. aDifferentially expressed genes which were both in spl5-FL and spl5-ML.