Skip to main content

Advertisement

Table 1 Functional classification of differentially expressed genes identified by the microarray analysis

From: Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance

Function type spl5 -FL spl5 -ML a Common
Up Down Up Down Up Down
Defense response 16 4 33 12 15 3
Oxidation-reduction process 13 6 33 35 12 5
Response to stress 5 1 14 5 4 1
Cellular amino acid metabolic process 6 2 15 6 6 1
Cellular cell wall/membrance organization 4 0 4 5 4 0
Hormone-mediated signaling pathway 4 2 8 10 4 0
Fatty acid biosynthetic process 7 3 12 10 6 1
Development 3 0 7 8 3 0
Carbohydrate metabolic process 4 1 16 18 4 1
Transport 6 3 17 21 6 2
ATP biosynthetic process 5 1 8 6 4 0
Photosynthesis 1 1 5 23 1 1
RNA/DNA 9 3 25 22 9 1
Apoptosis 1 0 2 0 1 0
Transcription factor 5 0 16 10 5 0
Kinase 11 5 32 14 10 3
Signal transduction 5 0 14 4 4 0
Protein modification process 6 0 15 15 6 0
Metal ion 2 2 3 7 2 2
Others 15 4 54 78 12 3
Unknow 48 29 112 142 43 23
Total 176 67 445 451 161 47
  1. aDifferentially expressed genes which were both in spl5-FL and spl5-ML.