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Table 1 Markers used for foreground selection of three bacterial blight resistance genes in marker-assisted backcross breeding

From: Pyramiding of three bacterial blight resistance genes for broad-spectrum resistance in deepwater rice variety, Jalmagna

Resistance gene

Chromosome number

Marker

Primer sequences used for gene detection

Expected size (bp)

Band type

reference

Forward(5’-3’)

Reverse(5’-3’)

xa5

5

xa5S (Multiplex)

GTCTGGAATTTGCTCGCGTTCG

TGGTAAAGTAGATACCTTATCAAACTGGA

410 bp, 310 bp,180 bp

STS

Sundaram et al. 2011

xa5SR/R (Multiplex)

AGCTCGCCATTCAAGTTCTTGAG

TGACTTGGTTCTCCAAGGCTT

xa13

8

RG136

TCCCAGAAAGCTACTACAGC

GCAGACTCCAGTTTGACTTC

530 bp, 490 bp

STS

Huang et al. 1997

Xa21

11

pTA248

AGACGCGGAAGGGTGGTTCCCGGA

AGACGCGGTAATCGAAGATGAAA

1000 bp

STS

Huang et al. 1997