Abiotic stress and genome dynamics: specific genes and transposable elements response to iron excess in rice

Finatto, Taciane; de Oliveira, Antonio Costa; Chaparro, Cristian; da Maia, Luciano C; Farias, Daniel R; Woyann, Leomar G; Mistura, Claudete C; Soares-Bresolin, Adriana P; Llauro, Christel; Panaud, Olivier; Picault, Nathalie

doi:10.1186/s12284-015-0045-6

Rice

Table 3 List of genes found both in our experiments and which are known to be involved in iron homeostasis

From: Abiotic stress and genome dynamics: specific genes and transposable elements response to iron excess in rice

Gene-ID	Description	log ₂ FC
Iron uptake
Os04g0578600	OsFRO2, ferric-chelate reductase/oxidase protein	1.40
Os02g0306401	OsNAAT1, Similar to Nicotianamine aminotransferase A	1.34
Os04g0659300	OsRMC, receptor like protein	3.04
Os06g0486800	OsFDH, Similar to Formate dehydrogenase, mitochondrial precursor	1.46
Transport
Os01g0238700	OsYSL1	1.45
Os08g0280300	OsYSL17	1.78
Os09g0396900	OsVIT1, putative vacuolar iron/manganese transporter	1.47
Os01g0503400	OSNRAMP6	1.43
Os07g0232800	OsZIP8	1.53
Os06g0566300	OsZIP10	1.25
Os08g0467400	OsZIP14	1.87
Os01g0279400	OsZIFL2, Major facilitator superfamily antiporter	−1.82
Os11g0135900	OsZIFL7, Major facilitator superfamily protein	1.09
Os12g0133300	OsZIFL13, Similar to Carbohydrate transporter/sugar porter/transporter	1.13
Os03g0571900	OsPEZ1, phenolics efflux transporter	1.61
Os01g0684900	Multi antimicrobial extrusion protein MatE family protein	1.07
Os10g0345100	Multi antimicrobial extrusion protein MatE family protein	1.16
Os06g0495500	Multi antimicrobial extrusion protein MatE family protein	1.55
Os09g0440700	OsCOPT7, putative copper cation transporter	1.14
Os01g0304100	OsCCC2, putative cation:chloride co-transporter	1.29
Homeostasis
Os03g0288000	OsMT1b, Similar to Metallothionein	1.12
Os05g0202800	OsMT3b, Similar to Metallothionein-like protein 3B	1.55
Os12g0567800	OsMT1f, Plant metallothionein, family 15 protein	2.01
Os12g0571000	OsMT1g, Metallothionein-like protein type 1	2.53
Transcription factors
Os01g0816100	OsNAC4, Similar to NAC domain protein	1.60
Os01g0884300	OsNAC6, No apical meristem (NAM) protein domain containing protein	1.20
Os03g0339100	OsPRL1	1.01
Os03g0860100	OsEBP1 (ethylene responsive element binding protein encoding gene)	1.94
Stress oxydatif
Os08g0561700	OsSOD4, OsCSD4, Similar to Superoxide dismutase	1.23
Os12g0613250	Similar to BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3	1.27
Os07g0665300	Similar to Superoxide dismutase	1.69
Os03g0285700	OsAPX1, APXa, OsAPx01, Similar to L-ascorbate peroxidase	1.20
Os10g0415300	OsGR3, GR3, Similar to Chloroplastic glutathione reductase	1.02
Os02g0280700	Similar to Iron/ascorbate-dependent oxidoreductase	1.42
Os07g0531400	Similar to Peroxidase 27 precursor (EC 1.11.1.7) (PRXR7)	1.20
Os11g0112200	Similar to Cationic peroxidase 1 precursor (EC 1.11.1.7) (PNPC1)	2.09
Os01g0327100	Haem peroxidase family protein	1.81
Os10g0527400	Similar to Tau class GST protein 3	1.54
Os10g0530900	Similar to Glutathione S-transferase GST 30 (EC 2.5.1.18)	1.85
Hormonal regulation
Os03g0860100	OsEBP1 (ethylene responsive element binding protein encoding gene)	1.94
Os02g0201900	DNA/RNA helicase, C-terminal domain containing protein	1.54
Os04g0475600	2OG-Fe(II) oxygenase domain containing protein. (ethylene)	1.35
Os05g0178600	Similar to Auxin-responsive protein (Aux/IAA) (Fragment)	1.01
Os02g0643800	Auxin responsive SAUR protein family protein	1.02
Os09g0491740	Auxin efflux carrier domain containing protein	1.14
Os09g0554300	Auxin efflux carrier domain containing protein	1.20
Os10g0147400	Similar to Auxin influx carrier protein	1.25
Os12g0529300	Similar to Auxin-binding protein	1.51
Os04g0288100	Similar to Auxin-binding protein ABP20	1.76
Os07g0164900	Similar to ABA aldehyde oxidase	1.29
Os12g0555200	Similar to Probenazole-inducible protein PBZ1. Gibberellins	1.13
Cytochrome P450
Os03g0760200	Cytochrome P450 family protein	1.71
Os02g0570700	Cytochrome P450 family protein	1.21
Os07g0418500	Similar to Cytochrome P450	2.77
Os07g0635500	Similar to Cytochrome P450	1.89
Os10g0515900	Cytochrome P450 family protein	1.26
Senescence and stress marker
Os04g0650000	ORYZAIN, Similar to Oryzain alpha chain precursor (EC 3.4.22.-)	1.32
Os04g0670200	Similar to Oryzain beta chain precursor (EC 3.4.22.-)	1.80
Os02g0709800	OsGAP1. RabGAP/TBC domain containing protein	1.33
Os09g0532000	OsSGR, TonB box, conserved site domain containing protein	1.62
Os04g0600300	OsAOX1b, Homodimeric diiron-carboxylate protein, Cyanide-resistant respiration in mitochondria	1.79

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