A QTL for root growth angle on rice chromosome 7 is involved in the genetic pathway of DEEPER ROOTING 1

Rice

Table 1 Putative QTLs for root growth angle detected in KD-F2

Chr.	Nearest marker	Map position (Mb) ^a	Genetic distance (cM) ^b	LOD	AE (°) ^c	DE (°) ^d	R ^2e
6	ah06000736	14.01	0.0	4.0	−3.7	1.3	10.2
7	P0082	17.12	0.0	5.4	−4.7	2.7	13.2
7	RM5508	23.56	0.0	7.7*	5.0	−4.2	21.9
							37.2^f

^aPhysical map position of each marker based on the latest version of the RAP database (IRGSP-1.0; http://rapdb.dna.affrc.go.jp/).
^bGenetic distance from the QTL LOD peak to the nearest marker.
^cAdditive effect of the allele from Kinandang Patong compared with that from IR64.
^dDominance effect of the allele from Kinandang Patong compared with that from IR64.
^ePercentage of the phenotypic variance explained by each QTL.
^fPercentage of the phenotypic variance explained by all three QTLs.
*Putative QTL with a significant LOD score based on 1000 permutation tests at the 5% level.