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Table 1 Comparison of genes responsible for Jasmonates (JA) biosynthesis and signaling between rice and other plants

From: Functional diversity of jasmonates in rice

Gene

Functions

References

Species

Gene

Functions

References

TASSELSEED-2

Increases contents of JA precursors, resulting in sterility

Liu et al. 2012a

maize

TASSELSEED-1

Lipoxygenase, affecting JA signaling in sex determination

Acosta et al. 2009

OsAOS

JA biosynthesis; 1sterility when silenced; 2resistance to Xanthomonas oryzae pv. oryzae (Xoo) and Magnaporthe grisea when overexpressed; 3activated by red and blue light

1Bae et al. 2010; 2Mei et al. 2006; 3Haga and Iino 2004

1,2 Arabidopsis

AOS

1JA biosynthesis; 1sterility when mutated; 2susceptible to bacterium Erwinia carotovora ssp. carotovora strain WPP14 (Ecc) when mutated; 3susceptible to Mycosphaerella pinodes when silenced

1Park et al. 2002; 2Pajerowska-Mukhtar et al. 2008; 3Toyoda et al. 2013

3 Pea

OsOPR

1JA biosynthesis; sterility complement when expressed in Arabidopsis opr3 mutant; 2activated in response to red light

1Tani et al. 2008; 2Riemann et al. 2003

1 Arabidopsis

OPR3

1JA biosynthesis; 1sterility when mutated; 2susceptible to M. pinodes when silenced

1Tani et al. 2008; 2Toyoda et al. 2013

2 Pea

OsAOC

1JA biosynthesis; 1early flowering, elongated sterile lemma and reduced fertility; 1enhanced fungal hyphal growth when mutated; 2involved in light-mediated inhibition of coleoptile elongation

1Riemann et al. 2013; 2Riemann et al. 2003

1 P. Patens

1 PpAOC

1Reduced fertility and altered sporophyte morphology when mutated; 2susceptible to M. pinodes when silenced

1Stumpe et al. 2010; 2Toyoda et al. 2013

2 Pea

OsJAR1

1Catalyzing JA-Ile production to resist blast attack; 1coleoptiles grow longer when mutated under FR; 2functioning in JA-light signaling

1Wakuta et al. 2011; 2Riemann et al. 2008

Arabidopsis

JAR1

1Affecting root elongation and seed germination; 2increased susceptibility to the soil fungus Pythium irregulare when mutated; 3hypocotyl growth inhibition when mutated; 4required for shade responses

1Staswick et al. 1992; 2Staswick et al. 1998; 3Chen et al. 2007; 4Robson et al. 2010

OsJMT1

Promoting production of MeJA

Kim et al. 2009

Arabidopsis

AtRMC

Promoting production of MeJA; grain yield reduction when overexpressed in rice

Kim et al. 2009

OsHI-LOX

1JA biosynthesis; 2susceptible to rice striped stem borer (SSB) and resistant to rice brown planthopper (BPH) when knocked down

1Li et al. 2013; 2Zhou et al. 2009

Arabidopsis

13-LOXs

1Contributing to rapid jasmonate synthesis in wounded leaves; 2defense against herbivores

1Chauvin et al. 2013; 2Chauvin 2014

OsCOI1

1A JA receptor; 1faster germination when silenced; 2activating JA responsive genes; 3resistance to Xoo

1Yang et al. 2012; 2Katsir et al. 2008; 2Yamada et al. 2012; 3Yang 2009

Arabidopsis

COI1

1Male sterility when mutated; resistance to insect herbivory and pathogens; growth inhibition; 2required for light-induced suppression of hypocotyl elongation in response to both R and FR light; 2suppressing chlorophyll biosynthesis

1Browse 2009b; 2Robson et al. 2010

OsJAZ

1Functioning in JA signaling; 1regulating JA responsive gene; 2participating in drought resistance; 3 involved in JA-induced resistance to bacterial blight

1Toda et al. 2013; 2Seo et al. 2011; 3Yamada et al. 2012

Arabidopsis

JAZ1

1functional in shade responses; 2 35S:JAZ1D transgenic plants display male sterility, reduced defense against Pseudomonas syringae, and showing altered JA-mediated root growth inhibition; 3 displaying reduced resistance to the generalist herbivore Spodoptera exigua

1Robson et al. 2010; 2Thines et al. 2007; 2Melotto et al. 2008; 3Chung et al. 2008

rim1

1Negatively regulating JA signaling; 1root inhibition when mutated; 2confering resistance to Rice dwarf virus

1Yoshii et al. 2010; 2Yoshii et al. 2008

Arabidopsis

ANAC028

Unknown function

Yoshii et al. 2008

OsWRKY45-1; OsWRKY45-2

Positively regulating JA signaling; directing defense against Xoo

Tao et al. 2009

Arabidopsis

AtWRKY45

1JA responsive; 2positively regulating Pi uptake

1Schluttenhofer et al. 2014; 2Wang et al. 2014

OsWRKY13

suppressing JA signaling; defense against Xoo and M. grisea

Tao et al. 2009

Soybean

GmWRKY13

increased sensitivity to salt and mannitol stresses, increase in lateral roots when overexpressed in Arabidopsis

Zhou et al. 2008

OsWRKY30

1Activating JA biosynthetic pathway; 1defense against Rhizoctonia Solani and M. Grisea; 2confering drought tolerance

1Peng et al. 2012; 2Shen et al. 2012

Capsicum annuum

CaWRKY30

Induced by various pathogens and SA, suppressed by JA

Zheng et al. 2011

OsNPR1

1Suppressing JA signaling; 1resisting against SSB when knockdown; 1mediating JA and ET crosstalk; 2mediating JA and SA crosstalk

1Li et al. 2013; 2Yuan et al. 2007

Arabidopsis

NPR1

1Involved in the SA-mediated suppression of JA signaling; 2required for systemic resistance conferred by the Mycorrhizal fungus Piriformospora indica

1Spoel et al. 2003; 2Stein et al. 2008

OsMPK

Causing reduced levels of JA and susceptible to SSB larvae when silenced

Wang et al. 2013

Arabidopsis

MPK4

1Positive regulator of ET- and JA-mediated defenses; 2negative regulator of SA-dependent systemic required resistance; 3implicated in responses to abiotic stress

1Brodersen et al. 2006; 2Petersen et al. 2000; 3Ichimura et al. 2000

OsPLDs

Resistance to SSB infestation; reducing their expression resulted in the reduced elicited levels of linolenic acid, JA, green leaf volatiles, and ethylene

Qi et al. 2011

Arabidopsis

PLDs

1mediating wound induction of JA; 2required for high salinity and water deficit tolerance; 3functional in microtubule organization, 4salicylic acid signaling and 5seedling development

1Wang et al. 2000; 2Bargmann et al. 2009; 3Gardiner et al. 2003; 4Krinke et al. 2009; 5Motes et al. 2005