Cis-element | Consensus core motif | Transcriptional regulator | Biological function |
---|---|---|---|
Auxin responseelement (AuxRE1) | TGTCTC | Auxin responsefactor (ARF1, ARF2) | Primary regulator of auxin-regulated expression |
Auxin responseelement (AuxRE2) | GACACA | Auxin responsefactor (ARF1, ARF2) | Primary regulator of auxin-regulated expression |
Auxin responseelement (AuxRE3) | GACActGACA | Auxin responsefactor (ARF1) | Primary regulator of auxin-regulated expression |
Gibberellin responseelement (GARE) | TAACCACC | GAMyb factors | Primary regulator of GA-regulated expression; primary regulator of sugar sensitivity of GA-responsive genes |
Glut element | AACA/ACGT | Unknown | Regulator of endosperm-specific expression of rice seed storage protein glutelin (OsGlut) |
Gt1/Gt2 box-I | ATATCATGAGTCACTTCA | GT1, GT2 | Positive regulator of endosperm-specific expression of rice glutelin (OsGlut) genes |
Gt1/Gt2 box-II | CTTTCGTGTACCACA | GT1, GT2 | Positive regulator of endosperm-specific expression of rice glutelin (OsGlut) genes |
Gt1/Gt2 box-III | ACAATGCTGCTCAATTA | GT1, GT2 | Positive regulator of endosperm-specific expression of rice glutelin (OsGlut) genes |
Gt1/Gt2 box-IV | ATTATCCAATGTCATATTG | GT1/GT2 | Positive regulator of endosperm-specific expression of rice glutelin (OsGlut) genes |
Gt1/Gt2 box-V | TAAGTCACGTTTGATGA | GT1, GT2 | Positive regulator of endosperm-specific expression of rice glutelin (OsGlut) genes |
Gt3 box | ATATCATGAGTCACTTCA | GT1, GT2, GT3 | Positive regulator of endosperm-specific expression of rice glutelin (OsGlut) genes |
PB-1 element | AAGCAACACACAAC | Dof-type P-boxBinding factor (PBF) | Positive regulator of endosperm-specific expression |
Prolamin box | TGTAGAA, TGTTTTAATATGACGTGG | Dof-type P-boxbinding factor (PBF) | Positive regulator of endosperm-specific expression |
SP8/SURE | TACTATT, TCACTATT, | Opaque-2 transcriptionfactor | Positive regulator of endosperm-specific expression |
LPSE1 | ATTTGAGCTGCC | Unknown | Positive spatial regulator of expression in green leaves, stem and young panicle |
LPSE2 | TTGATATATTTGT | Unknown | Positive regulator of expression on green leaves and negative regulator of expression in young panicle and roots |
LPSRE1 | CGGCGCGCCAC | Unknown | Positive regulator of expression in green leaves and negative regulator of expression in panicle and stem |
LPSRE2 | TTAGATAATGGA | Unknown | Positive spatial regulator of expression in green leaves, stem root, and young panicles |
PSE1 | TTTATCTATTTCC | Unknown | Negative regulator of expression in young panicle and stem |
PSE2 | TCTTTGGCAGAG | Unknown | Positive regulator of expression in green leaves and negative regulator of expression in stem and young panicles |
Ethylene and jasmonic acid responsive element | GCC-CORE | Ethylene response factor | Regulator of senescence-induced gene expression (OsERF) |
GS2 | TTCGAAATTGAACGTGCT-TAACCAAGAGAACAC | WRKY transcription factors | Senescence box |
ABRE (ACGT-type) | CGMCACGTB | OsABI5, OREB1 | ABA-response element for ABA regulated gene expression during stress response and seed maturation |
CE1 | TGCCACCGG | OsABI5, OREB1 | ABRE coupling factor |
CE3 | ACGCGTGTCCTC | OsABI5, OREB1 | ABRE coupling factor |
DRT/CRE | (a/g)CCGAC | OsDREB1, OsDREB2 | Dehydration response element for abiotic stress regulated gene expression independent of ABA |
Abiotic/oxidative stress Element | CACG | OsNAC6, OsNAC5, OsSNAC2 | Regulator of abiotic stress-responsive gene expression independent of the DREB regulon |
as1/ocs/TGA-like element | AATTTGAT, TAATTTGA | OsTGA10 | Regulator of chilling mediated oxidative stress signaling |
Pyrimidine-box/Myb2-box element | AAAGAAAAA, TAGTTTTT | OsMyb4 | Regulator of chilling mediated oxidative stress signaling |
JARE | CGTCA, TGACG, VCGCGB | Ethylene response factors (ERF) | Jasmonic acid response element; regulator of responses to pathogens and herbivores |
GCC-box | TAAGAGCCGCC | Ethylene response factors (ERF) | Negative regulator of responses to Magnaporthe oryzae |
P-box | CCGCCCTCCA | Ethylene response factors (ERF) | Disease responsive element |
W-box | TTGAC element | OsWRKY45, OsWRKY71, OsWRKY03, OsWRKY53, OsWRKY31, OsWRKY30, OsWRKY76 | Disease responsive |
E-box | CAGTCG, CACCTG | OsbHLH65 | Pathogen and herbivore response element; regulator of responses to Magnaporthe Oryzae and Nilaparvata lugens |