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Table 4 QTLs for four traits detected in RIL population in Hainan and Hangzhou

From: Genetic analysis of flag leaf size and candidate genes determination of a major QTL for flag leaf width in rice

Traits

QTL

Site

Chr.

LOD

Marker interval

Genetic distance (cM)

A a

PVE (%) b

Reported QTL

 

qFLL1

Hainan

1

2.84

C1.loc24 ~ C1_9329218

24 ~ 36.57

0.59

4

qFll1(Tong et al. 2007)

 

qFLL10

Hainan

10

2.90

C10_14487894 ~ C10.loc82

66.60 ~ 80.78

0.91

10

 
 

qFLL11

Hainan

11

3.82

C11.loc67 ~ C11_24850981

66.86 ~ 73.22

−0.96

11

 
 

qFLL12

Hainan

12

2.87

C12_24654159 ~ C12.loc108

95.40 ~ 108.13

−0.68

6

 

FLL

qFLL1.1

Hangzhou

1

2.74

C1.loc56 ~ C1_19351415

56.65 ~ 70.12

1.72

8

 
 

qFLL1.2

Hangzhou

1

3.92

C1.loc124 ~ C1.loc140

124.21 ~ 133.43

−1.87

10

 
 

qFLL1.3

Hangzhou

1

3.32

C1_39017544 ~ C1_39489223

143.28 ~ 151.29

−1.95

5

fll1(Yan et al. 1999)

 

qFLL8

Hangzhou

8

3.70

C8_9083764 ~ C8_10724396

38.19 ~ 49.48

1.75

8

 
 

qFLL10

Hangzhou

10

2.69

C10_706046 ~ C10_1469028

1.92 ~ 10.41

1.59

6

qFLW10(Li et al. 2010)

 

qFLW1

Hainan

1

5.28

C1_6803535 ~ C1_7849762

20.64 ~ 29.99

0.08

15

qFlr1(Tong et al. 2007)

 

qFLW4

Hainan

4

5.29

C4_23377395 ~ C4_23560797

84.83 ~ 85.41

0.05

6

 
 

qFLW5

Hainan

5

3.88

C5_24207944 ~ C5.loc103

93.24 ~ 103.16

−0.04

3

 
 

qFLW7.1

Hainan

7

4.20

C7_4865508 ~ C7_4925247

7.89 ~ 8.28

0.04

3

 
 

qFLW7.2

Hainan

7

4.25

C7_22333409 ~ C7_25017224

45.68 ~ 51.79

0.08

14

 
 

qFLW12

Hainan

12

2.99

C12_24691752 ~ C12.loc104

95.79 ~ 104.66

−0.07

10

 

FLW

qFLW3

Hangzhou

3

3.49

C3_29306491 ~ C3_29977886

95.57 ~ 99.05

−0.09

12

 
 

qFLW4

Hangzhou

4

3.26

C4_22748438 ~ C4_23560797

79.41 ~ 85.41

0.06

6

qFLW4.1(Xu et al. 2011)

 

qFLW5

Hangzhou

5

3.85

C5_24207944 ~ C5_26190467

93.24 ~ 104.92

−0.08

10

 
 

qFLW7.1

Hangzhou

7

4.80

C7_4865508 ~ C7_4925247

7.89 ~ 8.28

0.04

3

qFLW7-1(Li et al. 2010)

 

qFLW7.2

Hangzhou

7

5.13

C7_22297400 ~ C7_25017224

45.30 ~ 51.79

0.11

17

 
 

qFLW8

Hangzhou

8

7.45

C8_4613627 ~ C8_5260282

24.84 ~ 27.34

0.13

24

 
 

qFLW10

Hangzhou

10

4.66

C10_18696371 ~ C10_18804231

84.78 ~ 85.16

0.04

2

qFLWR10(Zhou et al. 2012)

 

qFLW12

Hangzhou

12

3.31

C12_25189929 ~ C12_26963973

96.96 ~ 110.23

−0.10

12

 
 

qLWR4

Hainan

4

6.13

C4_26804875 ~ C4_25808877

93.92 ~ 100.82

−0.62

13

 
 

qLWR7

Hainan

7

3.26

C7_27035206 ~ C7_27020954

57.52 ~ 58.71

0.17

1

 
 

qLWR8

Hainan

8

2.72

C8.loc28 ~ C8_4544399

23.87 ~ 28.30

−0.13

1

qFlr8(Tong et al. 2007)

 

qLWR10

Hainan

10

3.67

C10.loc80 ~ C10.loc79

79.25 ~ 80.02

0.47

7

 
 

qLWR11

Hainan

11

3.33

C11_24536879 ~ C11.loc63

63.79 ~ 71.50

−0.53

10

 
 

qLWR1

Hangzhou

1

4.83

C1.loc126 ~ C1.loc131

126.33 ~ 131.13

−1.11

9

 

LWR

qLWR4

Hangzhou

4

3.93

C4_23257341 ~ C4_23560797

84.45 ~ 85.41

−1.19

10

 
 

qLWR5

Hangzhou

5

4.37

C5_22399125 ~ C5_22575173

88.83 ~ 89.02

0.72

4

qFLW5.1(Xu et al. 2011)

 

qLWR7

Hangzhou

7

2.50

C7_27020954 ~ C7_27614442

57.52 ~ 60.83

−0.64

3

qFLL7(Li et al. 2010)

 

qLWR10

Hangzhou

10

2.57

C10_706046 ~ C10_2088765

1.92 ~ 11.17

1.11

8

 
 

qLWR11

Hangzhou

11

3.01

C11_23743973 ~ C11_24330376

65.89 ~ 70.54

−0.56

2

 
 

qLWR12

Hangzhou

12

5.61

C12_21654866 ~ C12_21692352

72.76 ~ 74.16

−1.09

8

qFL12(Zhou et al. 2012)

 

qPY1

Hainan

1

3.97

C1_27996574 ~ C1_28029950

105.67 ~ 106.26

0.45

2

 
 

qPY4

Hainan

4

6.30

C4.loc70 ~ C4.loc72

68.97 ~ 72.09

−0.85

8

 
 

qPY3

Hangzhou

3

2.58

C3.loc125 ~ C3_35974986

126.09 ~ 132.41

2.60

9

 

PY

qPY6

Hangzhou

6

3.34

C6_23535296 ~ C6_27331925

54.51 ~ 66.62

3.33

11

Unnamed(Jiang et al. 2004)

 

qPY7

Hangzhou

7

2.61

C7_22387620 ~ C7_25413216

49.20 ~ 53.34

2.95

10

 
 

qPY8

Hangzhou

8

2.92

C8_4060421 ~ C8_8591477

23.29 ~ 36.27

2.72

10

 
 

qPY12.1

Hangzhou

12

2.75

C12_21588194 ~ C12_23465426

72.18 ~ 88.24

2.70

8

 
 

qPY12.2

Hangzhou

12

2.75

C12.loc103 ~ C12.loc105

103.90 ~ 105.05

−1.03

2

 
  1. aAdditive effects; The positive value indicates that alleles from 93–11 increase the effect.
  2. bPVE is the percentage of phenotypic variation explained by the detected QTL.