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Table 1 The Pearson correlation coefficient values of co-expression between known defense-related MAP kinase genes and MPKK s in japonica and indica rice lines a

From: Transcriptome-based analysis of mitogen-activated protein kinase cascades in the rice response to Xanthomonas oryzae infection

Japonica rice lines (Mudanjiang 8 and Rb49) b

 

MPKKK1

MPKK1

MPKK3

MPKK4

MPKK5

MPKK6

MPKK10-2

MPK5

MPK6

MPK12

MPKKK1

1

0.903

0.859

0.663

0.666

0.752

−0.004

0.336

0.860

0.644

MPKK1

0.903

1

0.910

0.876

0.860

0.744

0.258

0.275

0.818

0.712

MPKK3

0.859

0.910

1

0.758

0.890

0.771

0.094

0.328

0.914

0.704

MPKK4

0.663

0.876

0.758

1

0.799

0.748

0.540

0.382

0.585

0.822

MPKK5

0.666

0.860

0.890

0.799

1

0.641

0.281

0.125

0.731

0.603

MPKK6

0.752

0.744

0.771

0.748

0.641

1

0.231

0.758

0.731

0.936

MPKK10-2

−0.004

0.258

0.094

0.540

0.281

0.231

1

0.142

−0.186

0.426

MPK5

0.336

0.275

0.328

0.382

0.125

0.758

0.142

1

0.375

0.747

MPK6

0.860

0.818

0.914

0.585

0.731

0.731

−0.186

0.375

1

0.626

MPK12

0.644

0.712

0.704

0.822

0.603

0.936

0.426

0.747

0.626

1

Indica rice lines (IR24 and IRBB13) c

 

MPKKK1

MPKK1

MPKK3

MPKK4

MPKK5

MPKK6

MPKK10-2

MPK5

MPK6

MPK12

MPKKK1

1

0.979

0.755

0.670

0.774

0.700

−0.072

0.551

0.886

0.681

MPKK1

0.979

1

0.781

0.654

0.766

0.729

−0.106

0.488

0.930

0.697

MPKK3

0.755

0.781

1

0.489

0.936

0.740

−0.045

0.161

0.592

0.776

MPKK4

0.670

0.654

0.489

1

0.409

0.678

0.470

0.687

0.558

0.742

MPKK5

0.774

0.766

0.936

0.409

1

0.619

0.003

0.156

0.537

0.716

MPKK6

0.700

0.729

0.740

0.678

0.619

1

0.113

0.176

0.576

0.658

MPKK10-2

−0.072

−0.106

−0.045

0.470

0.003

0.113

1

0.249

−0.239

0.240

MPK5

0.551

0.488

0.161

0.687

0.156

0.176

0.249

1

0.507

0.285

MPK6

0.886

0.930

0.592

0.558

0.537

0.576

−0.239

0.507

1

0.531

MPK12

0.681

0.697

0.776

0.742

0.716

0.658

0.240

0.285

0.531

1

  1. aThe names of MAP kinase genes known to be involved in rice–Xoo interactions are shown in red color.
  2. bThe threshold is 0.66 with a false discovery rate of 0.001 for japonica rice lines.
  3. cThe threshold is 0.73 with a false discovery rate of 0.001 for indica rice lines.