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Table 1 Genetic diversity and population differentiation

From: Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people’s republic of Korea (DPRK; North Korea)

A. Genetic diversity

Population

Nucleus

Chloroplast

  

No. of samples

Gene diversity

Allelic richness

No. of samples

Gene diversity

Allelic richness

  

DPRK

Group1

63

0.304

2.007

62

0.134

1.466

  

Group2

8

0.441

2.240

6

0.046

1.083

  

admixed

10

0.454

2.418

10

0.255

1.674

  

Mini-Rice Diversity Panel

temperate japonica

10

0.280

1.912

9

0.113

1.248

  

tropical japonica

11

0.385

2.312

11

0.152

1.459

  

aromatic

5

0.331

1.742

5

0.246

1.457

  

indica

9

0.522

2.722

9

0.293

1.734

  

aus

10

0.470

2.486

10

0.207

1.640

  

B. Pairwise Fst and Rst based on nSSRs

Model based group

Group1

Group2

admixed

temperate japonica

tropical japonica

aromatic

indica

aus

DPRK

Group1

0

0.15698*

0.02852

0.31672**

0.30472**

0.28058*

0.44312**

0.43371**

Group2

0.44127**

0

0.06471

0.46329**

0.43001**

0.41775**

0.32082**

0.44695**

admixed

0.13387**

0.27433**

0

0.41645**

0.41255**

0.3671**

0.42727**

0.49235**

Mini-Rice Diversity Panel

temperate japonica

0.17589**

0.50115**

0.24504**

0

0.36977**

0.39332**

0.55988**

0.51885**

tropical japonica

0.42686**

0.42243**

0.36964**

0.44131**

0

0.37587**

0.50219**

0.44887**

aromatic

0.56358**

0.55827**

0.49773**

0.62088**

0.39265**

0

0.61571**

0.52853**

indica

0.59369**

0.33043**

0.41700**

0.57704**

0.50522**

0.55020**

0

0.39948**

aus

0.60742**

0.43762**

0.47938**

0.60109**

0.49746**

0.49755**

0.35632**

0

C. Pairwise Fst based on chloroplast haplotype

Model based group

Group1

Group2

admixed

temperate japonica

tropical japonica

aromatic

indica

aus

DPRK

Group1

0

       

Group2

0.12911

0

      

admixed

0.01667

0.15174

0

     

Mini-Rice Diversity Panel

temperate japonica

0.02233

0.10224

−0.05469

0

    

tropical japonica

0.31411**

0.46612**

0.18716**

0.2543**

0

   

aromatic

0.41235**

0.63359**

0.26113**

0.34396**

0.14715*

0

  

indica

0.42547**

0.61186**

0.22359**

0.38889**

0.16664*

0.27747**

0

 

aus

0.42271**

0.60000**

0.21509**

0.38722**

0.21908**

0.24837**

0

0

  1. Fst below diagonal and Rst above diagonal.
  2. * P-values <0.05.
  3. ** P-values <0.01.