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Table 6 Percentage of variation for seed biometric indexes explained by the tested GBSSI molecular markers in the germplasm collection

From: Improvement of marker-based predictability of Apparent Amylose Content in japonica rice through GBSSI allele mining

 

Decorticated grain lenght

Decorticated grain width

Lenght to width ratio

Molecular marker

Variation (%)

p-value

Variation (%)

p-value

Variation (%)

p-value

SNP intron1

30.8

0.000

49.7

0.000

47.7

0.000

CTn

10.8

0.136

37.7

0.000

30.2

0.000

SNP intron1/SNP exon6

30.9

0.000 intron1

52

0.000 intron1

49.3

0.000 intron1

0.791 exon6

0.051 exon6

0.11 exon6

SNP intron1/CTn

21.8

0.043 CTn

37.7

0.008 CTn

33.7

0.033 CTn

0.000 intron1

0.798 intron1

0.015 intron1

SNP intron1/CTn/SNP exon6

22.8

0.000 intron1

38.3

0.41 intron1

35.4

0.003 intron1

0.029 CTn

0.020 CTn

0.029 CTn

0.243 exon6

0.295 exon6

0.087 exon6

SNP intron1/SNP exon6/SNP intron6

10.2

0.007 intron1

29.2

0.000 intron1

26.0

0.000 intron1

0.779 exon6

0.045 exon6

0.102 exon6

0.363 intron6

0.055 intron6

0.098 intron6

SNP intron1/SNP exon6/SNP intron6/CTn

22.9

0.019 intron1

39.3

0.465 intron1

35.6

0.316 intron1

0.244 exon6

0.293 exon6

0.088 exon6

0.627 intron6

0.188 intron6

0.566 intron6

  

0.037 CTn

 

0.037 CTn

 

0.064 CTn

  1. For each marker the explained variation and the associated p-value considering each molecular marker singularly or in association with others are reported.