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Table 2 Alleles identified for the RM190 microsatellite in the germplasm collection

From: Improvement of marker-based predictability of Apparent Amylose Content in japonica rice through GBSSI allele mining

CT-repeats (RM190)

Allelic pattern SNPs intron 1 and exon 6a

Number of cvs.

AAC range (%)

AAC average (%)

9

GA

3

24.18 – 24.85

24.49

10

GA

2

23.57 – 24.19

23.88

11

GA

3

24.35 – 26.03

25.26

13

GC

1

22.55

 

14

GA

4

23.06 – 24.30

23.80

17

TA

6

16.42 – 23.27

19.05

17

GC

8

20.65 – 23.93

22.44

18

TA

67

14.92 – 21.56

18.37

19

TA

6

15.55 – 21.30

17.78

20

GA

7

23.10 – 25.46

24.71

20

GC

18

22.21 – 25.03

23.50

21

GC

1

22.84

 
  1. aThe two bases indicate the SNP alleles in intron 1 and in exon 6, respectively.