Table 5 Statistics of dbSNP
From: SNP-based analysis of genetic diversity in anther-derived rice by whole genome sequencing
chr | Number of rsfSNP | Build4.0 genome sequence | Build5.0 genome sequence | ||
|---|---|---|---|---|---|
Number of mapping rsfSNP | Rate of mapping rsfSNP | Number of mapping rsfSNP | Rate of mapping rsfSNP | ||
Total | 4,521,605 | 3,985,629 | 0.881463 | 3,985,423 | 0.881418 |
(5,418,373) | (4,481,743) | (0.827138) | (4,481,537) | (0.827100) | |
1 | 547,062 (12%) | 481,321 (12%) | 0.879829 | 481,344 (12%) | 0.879871 |
2 | 463,395 (10%) | 408,263 (10%) | 0.881026 | 408,250 (10%) | 0.880998 |
3 | 449,034 (10%) | 402,287 (10%) | 0.895894 | 402,289 (10%) | 0.895899 |
4 | 367,590 (8%) | 323,843 (8%) | 0.880990 | 323,783 (8%) | 0.880826 |
5 | 354,080 (8%) | 314,864 (8%) | 0.889245 | 314,857 (8%) | 0.889226 |
6 | 379,978 (8%) | 336,607 (8%) | 0.885859 | 336,617 (8%) | 0.885885 |
7 | 361,174 (8%) | 315,166 (8%) | 0.872615 | 315,185 (8%) | 0.872668 |
8 | 355,927 (8%) | 314,842 (8%) | 0.884569 | 314,850 (8%) | 0.884592 |
9 | 302,749 (7%) | 268,656 (7%) | 0.887389 | 268,632 (7%) | 0.887309 |
10 | 286,270 (6%) | 250,494 (6%) | 0.875027 | 250,453 (6%) | 0.874884 |
11 | 332,510 (7%) | 288,612 (7%) | 0.867980 | 288,529 (7%) | 0.867730 |
12 | 321,836 (7%) | 280,674 (7%) | 0.872103 | 280,634 (7%) | 0.871978 |
Multia | 697,672 | 472,089 | 0.676663 | 472,089 | 0.676663 |
NotOnb | 199,096 | 24,025 | 0.12067 | 24,025 | 0.12067 |