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Table 1 Assessment and processing of re-sequencing datasets used in this study

From: Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

Library Typea Original read length (bp) Number of reads
Initial purity filtered reads Remaining after low quality trimming Remaining after adaptor trimming Remaining after pairingb
NIAS SE 36 70,387,992 59,966,207 59,344,842 -
   51 60,164,564 51,717,577 50,981,527 -
CSHL PE 76 269,062,790 261,197,347 257,096,019 246,779,548 (10,316,471)
  1. a SE: single-end reads, PE: paired-end reads.
  2. b The value in parenthesis is the number of unpaired reads for which one of the reads in a pair was discarded during the preprocessing to remove low quality reads.