Table 3 Differential recoveries of the insertion mutagens in compartments of the rice genome (Updated from Droc et al. 2013 )
From: International Consortium of Rice Mutagenesis: resources and beyond
Mapped sequence | Intergenic | Genic | Promoter | 5 UTR | Exon | Intron | 3 UTR | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mutagen | Source | Nb of sequences | Nb | % | Nb | % | Nb | % | Nb | % | Nb | % | Nb | % | Nb | % | Nb | % |
Ds | CSIRO | 611 | 591 | 96.7 | 160 | 27.1 | 432 | 73.1 | 98 | 22.7 | 19 | 4.4 | 175 | 40.5 | 88 | 20.4 | 52 | 12.0 |
Ds | OSTID | 1380 | 1373 | 99.5 | 402 | 29.3 | 972 | 70.8 | 212 | 21.8 | 34 | 3.5 | 371 | 38.2 | 210 | 21.6 | 145 | 14.9 |
Ds | PMBBRC | 1072 | 1053 | 98.2 | 263 | 25.0 | 791 | 75.1 | 175 | 22.1 | 29 | 3.7 | 310 | 39.2 | 176 | 22.3 | 101 | 12.8 |
Ds | UCD | 1122 | 1101 | 98.1 | 422 | 38.3 | 680 | 61.8 | 140 | 20.6 | 42 | 6.2 | 248 | 36.5 | 166 | 24.4 | 84 | 12.4 |
Ds | UCD-RGT | 3719 | 3661 | 98.4 | 1244 | 34.0 | 2418 | 66.0 | 686 | 28.4 | 125 | 5.2 | 714 | 29.5 | 568 | 23.5 | 325 | 13.4 |
dSpm | UCD | 12889 | 11921 | 92.5 | 6238 | 52.3 | 5684 | 47.7 | 1622 | 28.5 | 128 | 2.3 | 1365 | 24.0 | 1160 | 20.4 | 1409 | 24.8 |
T-DNA | OTL | 26788 | 24716 | 92.3 | 11336 | 45.9 | 13380 | 54.1 | 4490 | 33.6 | 618 | 4.6 | 2520 | 18.8 | 3461 | 25.9 | 2291 | 17.1 |
T-DNA | Postech | 107171 | 106011 | 98.9 | 37232 | 35.1 | 68779 | 64.9 | 22308 | 32.4 | 3600 | 5.2 | 14505 | 21.1 | 17799 | 25.9 | 10567 | 15.4 |
T-DNA | RMD | 65085 | 31276 | 48.1 | 16258 | 52.0 | 15018 | 48.0 | 5002 | 33.3 | 720 | 4.8 | 2865 | 19.1 | 3881 | 25.8 | 2550 | 17.0 |
T-DNA | SHIP | 12614 | 9682 | 76.8 | 3786 | 39.1 | 5896 | 60.9 | 2079 | 35.3 | 286 | 4.9 | 989 | 16.8 | 1289 | 21.9 | 1253 | 21.3 |
T-DNA | TRIM | 38840 | 38302 | 98.6 | 14195 | 37.1 | 24107 | 62.9 | 8230 | 34.1 | 1694 | 7.0 | 5196 | 21.6 | 5342 | 22.2 | 3645 | 15.1 |
Tos17 | NIAS | 77740 | 77683 | 99.9 | 10029 | 12.9 | 67654 | 87.1 | 6744 | 10.0 | 1349 | 2.0 | 26985 | 39.9 | 27239 | 40.3 | 5337 | 7.9 |
Tos17 | OTL | 14284 | 14160 | 99.1 | 1937 | 13.7 | 12223 | 86.3 | 1014 | 8.3 | 196 | 1.6 | 5644 | 46.2 | 4414 | 36.1 | 955 | 7.8 |
Tos17 | RMD | 19062 | 14732 | 77.3 | 5905 | 40.1 | 8827 | 59.9 | 945 | 10.7 | 156 | 1.8 | 3114 | 35.3 | 3825 | 43.3 | 787 | 8.9 |
TOTAL | 382377 | 336262 | 109407 | 226861 | 67.47 | 53745 | 15.98 | 8996 | 2.68 | 65001 | 19.33 | 69618 | 20.70 | 29501 | 8.77 | |||