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Table 2 Significant affected biochemical pathways under drought stress in rice

From: Transcriptome analysis of leaf and root of rice seedling to acute dehydration

Pathway

Leaf

Root

 

0.5 h

 

2 h

 

6 h

 

12 h

 

0.5 h

 

2 h

 

6 h

 

12 h

 

U

D

C

U

D

C

U

D

C

U

D

C

U

D

C

U

D

C

U

D

C

U

D

C

Aerobic respiration

 

2

 

2

         

3

  

2

  

4

  

5

 

Gluconeogenesis

 

2

 

2

2

 

2

2

 

2

   

2

  

2

  

2

  

3

 

De novo BS of pyrimidine ribonucleotides

   

2

   

3

  

3

        

2

  

2

 

Mevalonate pw

  

2

   

2

       

2

         

Chorismate BS

   

2

  

2

  

2

   

2

  

2

  

2

  

2

 

Tryptophan BS

    

2

 

2

2

  

2

     

2

  

2

  

2

 

Photorespiration

 

2

  

3

  

3

  

3

       

2

     

Brassinosteroid BS II

        

2

  

2

   

2

       

2

Cytokinins 7-N-glucoside BS

     

2

  

2

  

2

2

       

2

  

2

Carotenoid BS

    

2

  

2

   

2

   

3

  

3

  

3

  

Starch degradation

 

2

        

2

  

2

        

2

 

IAA BS I

          

3

           

2

 

Ascorbate glutathione cycle

  

2

 

2

  

3

  

3

  

2

      

2

 

2

 

Carbon monoxide dehydrogenase pw

 

7

  

6

  

9

  

9

  

2

  

2

  

4

  

6

 

De novo BS of purine nucleotides I

 

4

  

4

  

6

  

8

     

2

  

7

  

7

 

dTDP-L-rhamnose BS

 

2

     

2

  

2

           

2

 

Phospholipid BS

 

3

  

2

  

2

  

2

  

2

        

2

 

Sterol BS

 

2

  

2

  

2

  

2

        

2

  

2

 

FormylTHF BS

 

2

     

3

  

3

  

2

     

2

  

3

 

Glycine BS

 

2

   

2

 

2

  

2

  

2

         

2

Cysteine BS

 

2

        

3

           

2

 

Glycine degradation

       

2

  

2

     

2

  

2

  

2

 

Tetrahydrofolate BS II

       

2

  

2

         

2

  

2

Triacylglycerol degradation

 

2

  

6

  

6

  

6

  

3

   

2

  

2

 

3

 

tRNA charging pw

 

4

  

3

  

5

  

5

  

2

     

2

  

6

 

Dolichyl-diphosphooligosaccharide biosyn

          

2

  

2

          

Chlorophyll BS

 

2

  

2

  

6

  

6

  

3

  

3

  

5

  

6

 

Lignin BS

        

2

  

2

       

4

  

4

 

GDP-D-rhamnose BS

        

2

          

2

  

3

 

Choline BS III

   

3

  

2

  

2

              

Trehalose BS

   

2

  

2

  

2

              

Asparagine degradation I

       

2

  

2

             

Calvin cycle

       

2

   

2

            

Fatty acid elongation _ saturated

          

2

             

Glycolipid BS

     

2

     

2

            

Lysine BS

    

2

  

2

  

2

             

Pantothenate BS

    

2

  

4

  

3

             

Threonine degradation

        

2

  

2

            

Cellulose BS

                

3

  

3

  

2

 

De novo BS of pyrimidine ribonucleotides

                   

2

  

2

 

Fatty acid BS _ initial steps

                

2

  

2

  

2

 

Homoserine BS

                   

2

  

2

 

Isopentenyl diphosphate BS _ mevalonate-independent

                      

2

 

Jasmonic acid BS

                    

2

   

Riboflavin and FMN and FAD BS

              

2

         

Ribose degradation

                       

2

  1. U/D: up/down-regulated, BS: biosynthesis, p/w: pathway. Total U, D and C enzymes in leaf are 75, 254, and 329; in root are 38, 193, and 231; respectively.