Table 5 Fst, numbers of alleles ( Na ), and Heterozygosity in SSR markers among three groups, rufi (Asian O. rufipogon , n = 32), meri ( O. meridionalis , n = 18), NG (New Guinean, n = 5), AUS (Australian O. rufipogon , n = 5) Jpn1 accessions (n = 3), and Jpn2-11 (accessions excluded Jpn1 site which obviously shared a similarity with O. rufipogon by nuclear INDELs, n = 20) with variation including all listed in Table 1
SSR locus | Â | Na(n=) | He | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Fst | Total | Asian rufi | meri | NG | Aus | Jpnl | Jpn2-11 | Total | Asian rufi | meri | NG | Aus | Jpn1 | Jpn2-11 |
SSR1 | 0.75 | 4 | 3 | 1 | 3 | 1 | 1 | 1 | 0.57 | 0.36 | 0.00 | 0.64 | 0.00 | 0.00 | 0.00 |
SSR2 | 0.21 | 10 | 6 | 5 | 4 | 2 | 1 | 2 | 0.83 | 0.71 | 0.68 | 0.70 | 0.38 | 0.00 | 0.32 |
SSR3 | 0.80 | 3 | 3 | 1 | 2 | 1 | 2 | 1 | 0.51 | 0.12 | 0.00 | 0.48 | 0.00 | 0.44 | 0.00 |
SSR5 | 0.54 | 5 | 4 | 1 | 4 | 1 | 1 | 1 | 0.60 | 0.66 | 0.00 | 0.72 | 0.00 | 0.00 | 0.00 |
SSR7 | 0.26 | 4 | 4 | 2 | 2 | 1 | 1 | 1 | 0.50 | 0.60 | 0.49 | 0.32 | 0.00 | 0.00 | 0.00 |
SSR9 | 0.50 | 9 | 7 | 1 | 3 | 1 | 3 | 1 | 0.66 | 0.67 | 0.00 | 0.64 | 0.00 | 0.67 | 0.00 |
SSR15 | 0.69 | 3 | 2 | 2 | 2 | Â | 2 | 1 | 0.63 | 0.17 | 0.28 | 0.48 | 0.00 | 0.44 | 0.00 |
No. of accessions | Â | 80 | 32 | 18 | 5 | 2 | 3 | 20 | Â | Â | Â | Â | Â | Â | Â |
Mean | 0.54 | 5.43 | 4.14 | 1.86 | 2.86 | 1.14 | 1.57 | 1.14 | 0.62 | 0.47 | 0.21 | 0.57 | 0.05 | 0.22 | 0.05 |
±SE | 0.09 | 1.09 | 0.67 | 0.55 | 0.34 | 0.14 | 0.30 | 0.14 | 0.04 | 0.09 | 0.11 | 0.06 | 0.05 | 0.11 | 0.05 |