From: Re-sequencing of mitochondrial genes in a standard rice cultivar Nipponbare
Gene | CDS Length (bp) | Position of SNP | Position of SNP in BA000029.3 | Notsu et al. (2002) | Tian et al. (2006) | Current study | |
---|---|---|---|---|---|---|---|
BA000029.3 | DQ167400.1 | Â | |||||
 |  |  |  | genomic seq | genomic seq | genomic seq | cDNA seq |
ccmFn | 1,785 | 185 | 323,671 | gGt (G) | gCt (A) | gCt (A) | gCt (A) |
 |  | 677 | 323,179 | gCc (A) | gGc (G) | gGc (G) | gGc (G) |
mat-r | 2,037 | 1,809 | 316,040 | cgT (R) | cgA (R) | cgA (R) | cgA (R) |
 |  | 1,812 | 316,037 | acC (T) | acG (T) | acG (T) | acG (T) |
nad4 | 1,488 | 759 | 200,397 | gcT (A) | gcA (A) | gcA (A) | gcA (A) |
nad6 | 618 | 21 | 60,116 | tcT (S) | tcG (S) | tcG (S) | tcG (S) |
 |  | 97 | 60,040 | Atc (I) | Gtc (V) | Gtc (V) | Gtc (V) |
 |  | 166 | 59,971 | Att (I) | Gtt (V) | Gtt (V) | Gtt (V) |
 |  | 398 | 59,739 | aAt (N) | aGt (S) | aGt (S) | aGt (S) |
 |  | 414 | 59,723 | gaC (D) | gaA (E) | gaA (E) | gaA (E) |
 |  | 467 | 59,670 | aCt (T) | aGt (S) | aGt (S) | aGt (S) |
 |  | 474 | 59,663 | atC (I) | atT (I) | atT (I) | atT (I) |
 |  | 476 | 59,661 | tCa (S) | tTa (L) | tTa (L) | tTa (L) |
 |  | 562 | 59,575 | Ctg (L) | Ttg (L) | Ttg (L) | Ttg (L) |
 |  | 567 | 59,570 | gaC (D) | gaT (D) | gaT (D) | gaT (D) |
 |  | 607 | 59,530 | Tcg (S) | Acg (T) | Acg (T) | Acg (T) |
rpl2 | 1,509 | 1,249 | 297,421 | Ttc (F) | Ctc (L) | Ctc (L) | Ctc (L) |
rrn18 | 1,695 | 1,566 | 282,896 | C | T | T | T |
rrn26 | 3,542 | 1,980 | 382,078 | G | C | C | C |