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Table 2 Promoter analysis of genes with similar expression patterns during the early stages of Fe deficiency

From: Rice genes involved in phytosiderophore biosynthesis are synchronously regulated during the early stages of iron deficiency in roots

  Gene locus Definition Number of the binding site
    IDEF1 IDEF2 OsIRO2
MAs-related genes      
  Os03g0307300 OsNAS1 2 4 0
  Os03g0307200 OsNAS2 5 7 0
  Os02g0306400 OsNAAT1 1 5 0
  Os03g0237100 OsDMAS1 0 4 0
  Os01g0323600 OsSAMS2 0 2 0
  Os06g0112200 MTN 1 4 0
  Os04g0669800 OsMTK1 2 1 0
  Os04g0669900 OsMTK2 1 4 0
  Os11g0216900 OsIDI2 0 5 0
  Os11g0484000 DEP 2 2 0
  Os03g0161800 OsIDI1/OsARD2 5 4 0
  Os09g0453800 OsIDI4 3 5 0
  Os12g0589100 OsAPT1 1 6 2
  Os02g0714600 PRPPS 2 0 0
  Os04g0306400 RPI 2 4 0
  Os06g0486800 FDH 2 3 0
  Os11g0134900 TOM1 9 7 0
  Os02g0650300 OsYSL15 1 4 2
Genes in Table 1      
  Os06g0639800 Cytochrome P450 family protein 2 5 0
  Os08g0562100 Sorghum chloroplast malate dehydrogenase-like (Fragment) 3 5 0
  Os09g0536700 Nodulin-like domain containing protein 0 3 0
  Os10g0440000 Cytochrome P450 family protein 2 1 0
  Os01g0878700 Amino acid transporter family protein 3 3 0
  Os03g0828600 Sodium/hydrogen exchanger family protein 5 6 0
  Os07g0258400 OsNRAMP1 2 7 0
  Os09g0440700 Leucine-rich repeat protein 1 2 0
  Os09g0345300 OsCOPT7 1 2 0
  Os12g0132500 TOM1-like 10 7 0
  Os01g0952800 OsIRO2 5 0 0
  Os01g0546100 DUF6 containing protein 1 3 1
  Os01g0647200 Non-protein coding transcript 0 6 1
  Os02g0445100 Auxin-responsive family protein-like 2 5 0
  Os03g0204900 Hypothetical protein 1 3 0
  Os03g0256200 Hypothetical protein 10 8 0
  Os07g0253600 (No Hit) 3 3 0
  Os08g0291000 (No Hit) 0 0 0
  Os04g0675000 DUF789 containing protein 2 4 0
  Os05g0519300 DUF506 containing protein 1 6 3
  Os09g0130300 Conserved hypothetical protein 0 8 0
  Os11g0129600 ELM domain containing protein 3 3 0
  Os12g0126200 ELM domain containing protein 1 1 0
  Os12g0236100 Conserved hypothetical protein 1 1 0
  1. Both strands of 1000-nucleotide upstream sequences were examined for the presence of the core binding sequences of three transcription factors. The sequences searched for were CATGC for IDEF1, CA (A/C)G(T/C)(T/C/A)(T/C/A) for IDEF2, and CACGTGG for OsIRO2.