Table 1 List of rice genes associated with the tryptophan biosynthesis pathway, their EC number assignments, gene nomenclature and the pattern of diurnal expression (Cycling peak)
Reaction | MSU gene ID | EC number | Enzymatic activity | Gene symbol | Cycling (Peak) |
|---|---|---|---|---|---|
1 | LOC_Os06g48620.1 | 4.1.3.27 | anthranilate synthase | ASA like | YES (0Â h) |
1 | LOC_Os04g38950.1 | 4.1.3.27 | anthranilate synthase | ASB1 | YES (12Â h) |
1 | LOC_Os03g15780.1 | 4.1.3.27 | anthranilate synthase | ASA2 | YES (12Â h) |
1 | LOC_Os03g50880.1 | 4.1.3.27 | anthranilate synthase | ASB2 | NO |
1 | LOC_Os03g61120.1 | 4.1.3.27 | anthranilate synthase | ASA1 | YES (12Â h) |
2 | LOC_Os06g41090.1 | 2.4.2.18 | anthranilate phosphoribosyltransferase | PAT | YES (0Â h) |
2 | LOC_Os05g30750.1 | 2.4.2.18 | anthranilate phosphoribosyltransferase | PAT | NO |
2 | LOC_Os04g39680.1 | 2.4.2.18 | anthranilate phosphoribosyltransferase | PAT | NO |
2 | LOC_Os02g03850.1 | 2.4.2.18 | anthranilate phosphoribosyltransferase | PAT | NO |
2 | LOC_Os03g03450.1 | 2.4.2.18 | anthranilate phosphoribosyltransferase | PAT | YES (12Â h) |
3 | LOC_Os02g16630.1 | 5.3.1.24 | phosphoribosylanthranilate isomerase | PAI | YES (12Â h) |
4 | LOC_Os09g08130.1 | 4.1.1.48 | indole-3-glycerol phosphate synthase | IGPS | YES (12Â h) |
5 | LOC_Os03g58260.1 | 4.1.2.8 | indole-3-glycerol phosphate lyase | TSA | YES (0Â h) |
5 | LOC_Os07g08430.1 | 4.1.2.8 | indole-3-glycerol phosphate lyase | TSA | YES (12Â h) |
5 | LOC_Os03g58290.1 | 4.1.2.8 | indole-3-glycerol phosphate lyase | TSA | Not on Array |
5 | LOC_Os03g58320.1 | 4.1.2.8 | indole-3-glycerol phosphate lyase | TSA | Not on Array |
5 | LOC_Os03g58300.1 | 4.1.2.8 | indole-3-glycerol phosphate lyase | TSA | YES (12Â h) |
6 | LOC_Os08g04180.1 | 4.2.1.20 | tryptophan synthase | TSB1 | YES (12Â h) |
6 | LOC_Os06g42560.1 | 4.2.1.20 | tryptophan synthase | TSB2 Type-2 | NO |