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Table 1 List of rice genes associated with the tryptophan biosynthesis pathway, their EC number assignments, gene nomenclature and the pattern of diurnal expression (Cycling peak)

From: A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

Reaction MSU gene ID EC number Enzymatic activity Gene symbol Cycling (Peak)
1 LOC_Os06g48620.1 4.1.3.27 anthranilate synthase ASA like YES (0 h)
1 LOC_Os04g38950.1 4.1.3.27 anthranilate synthase ASB1 YES (12 h)
1 LOC_Os03g15780.1 4.1.3.27 anthranilate synthase ASA2 YES (12 h)
1 LOC_Os03g50880.1 4.1.3.27 anthranilate synthase ASB2 NO
1 LOC_Os03g61120.1 4.1.3.27 anthranilate synthase ASA1 YES (12 h)
2 LOC_Os06g41090.1 2.4.2.18 anthranilate phosphoribosyltransferase PAT YES (0 h)
2 LOC_Os05g30750.1 2.4.2.18 anthranilate phosphoribosyltransferase PAT NO
2 LOC_Os04g39680.1 2.4.2.18 anthranilate phosphoribosyltransferase PAT NO
2 LOC_Os02g03850.1 2.4.2.18 anthranilate phosphoribosyltransferase PAT NO
2 LOC_Os03g03450.1 2.4.2.18 anthranilate phosphoribosyltransferase PAT YES (12 h)
3 LOC_Os02g16630.1 5.3.1.24 phosphoribosylanthranilate isomerase PAI YES (12 h)
4 LOC_Os09g08130.1 4.1.1.48 indole-3-glycerol phosphate synthase IGPS YES (12 h)
5 LOC_Os03g58260.1 4.1.2.8 indole-3-glycerol phosphate lyase TSA YES (0 h)
5 LOC_Os07g08430.1 4.1.2.8 indole-3-glycerol phosphate lyase TSA YES (12 h)
5 LOC_Os03g58290.1 4.1.2.8 indole-3-glycerol phosphate lyase TSA Not on Array
5 LOC_Os03g58320.1 4.1.2.8 indole-3-glycerol phosphate lyase TSA Not on Array
5 LOC_Os03g58300.1 4.1.2.8 indole-3-glycerol phosphate lyase TSA YES (12 h)
6 LOC_Os08g04180.1 4.2.1.20 tryptophan synthase TSB1 YES (12 h)
6 LOC_Os06g42560.1 4.2.1.20 tryptophan synthase TSB2 Type-2 NO
  1. The reaction numbers in column-1 correspond to the reaction numbers listed in Figure 2.