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Rice
Figure 2 | Rice

Figure 2

From: WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks

Figure 2

Pathway GeneSWAPPER (PGS) can be utilized not only to project a new species network but also to enrich the existing template network. (A) A section of the rice network with green colored boxes indicating rice gene paralogs; (B) the same section of rice network as shown in A with color highlighted boxes indicating paralog density; (C) a section of the Arabidopsis network showing rice gene homologs in green colored boxes; (D) the same section of Arabidopsis network with color highlighted boxes indicating paralog density. Figures B and D showing paralog densities displayed on the network were produced by passing the networks through Pathway GeneSWAPPER with the paralog map option enabled. The color code for number of paralogs in the images suggests blue=0/absent; purple=1; magenta=2; red=3 and/or the maximum number of paralogs in the network. However, this color scale is dynamically adjusted to depict the range between the minimum number represented by blue (1 in B; 0/absent in D) and the maximum number represented by red.

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