Table 1 Information on functionally characterized genes extracted from each article
From: OGRO: The Overview of functionally characterized Genes in Rice online database
Gene information item | Remarks |
|---|---|
Gene | Unabbreviated gene name |
Gene symbol | Abbreviated gene name |
Major category | Corresponds to the criteria used in Q-TARO (Yonemaru et al. 2010; http://qtaro.abr.affrc.go.jp/) |
Category of objective character | Corresponds to the criteria used in Q-TARO (Yonemaru et al. 2010; http://qtaro.abr.affrc.go.jp/) |
Chr | Chromosome number |
Genome start | Corresponds to IRGSP pseudomolecules build 4 (http://rgp.dna.affrc.go.jp/E/IRGSP/Build4/build4.html) |
Genome end | Corresponds to IRGSP pseudomolecules build 4 (http://rgp.dna.affrc.go.jp/E/IRGSP/Build4/build4.html) |
Locus ID | RAP locus (Rice Annotation Project 2008; http://rapdb.dna.affrc.go.jp/), MSU Osa1 rice locus (Yuan et al. 2005; http://rice.plantbiology.msu.edu/), osa-miRNA ID (Griffiths-Jones et al. 2008; http://www.mirbase.org/), or GenBank (http://www.ncbi.nlm.nih.gov/genbank/) accession number |
Method of isolation | The term "natural variation" was used for genes functionally characterized by using cultivars, landraces, or wild relatives. The term "knockdown/overexpression" indicates that the genes were characterized using both knockdown and overexpression transgenic plants. |
Objective character | Phenotypes described in each of the articles |
Reference | Identified by the Digital Object Identifier (doi) |