Table 2 Characteristics of the 19 SSR loci including their repeat motif, the number of alleles per locus, and PIC value in the two rice collections (Myanmar and reference set)
From: Specific patterns of genetic diversity among aromatic rice varieties in Myanmar
Marker | Chr. | SSR motif | Reference set accessions1 | Myanmar collection2 | Reference set group 53 | Myanmar group 54 | ||||
|---|---|---|---|---|---|---|---|---|---|---|
No of alleles | PIC | No of alleles | PIC | No of alleles | PIC | No of alleles | PIC | |||
RM1 | 1 | (GA)26 | 13 | 0.82 | 16 | 0.73 | 5 | 0.50 | 9 | 0.48 |
RM5 | 1 | (GA)14 | 11 | 0.85 | 9 | 0.82 | 8 | 0.72 | 9 | 0.83 |
RM11 | 7 | (GA)17 | 10 | 0.78 | 9 | 0.67 | 4 | 0.36 | 7 | 0.37 |
RM25 | 8 | (GA)18 | 11 | 0.69 | 10 | 0.75 | 6 | 0.45 | 6 | 0.64 |
RM44 | 8 | (GA)16 | 11 | 0.72 | 5 | 0.67 | 3 | 0.42 | 5 | 0.53 |
RM124 | 4 | (TC)10 | 4 | 0.56 | 3 | 0.42 | 4 | 0.60 | 3 | 0.30 |
RM154 | 2 | (GA)21 | 15 | 0.89 | 12 | 0.85 | 9 | 0.74 | 10 | 0.82 |
RM215 | 9 | (CT)16 | 7 | 0.66 | 7 | 0.52 | 4 | 0.50 | 6 | 0.45 |
RM237 | 1 | (CT)18 | 8 | 0.79 | 11 | 0.60 | 5 | 0.60 | 5 | 0.32 |
RM271 | 10 | (GA)15 | 7 | 0.69 | 8 | 0.53 | 3 | 0.37 | 7 | 0.33 |
RM287 | 11 | (GA)21 | 11 | 0.61 | 12 | 0.70 | 4 | 0.23 | 9 | 0.60 |
RM316 | 9 | Complex | 9 | 0.73 | 7 | 0.30 | 7 | 0.58 | 6 | 0.22 |
RM338 | 3 | (CTT)6 | 3 | 0.40 | 2 | 0.24 | 2 | 0.17 | 2 | 0.36 |
RM431 | 1 | (AG)16 | 10 | 0.75 | 9 | 0.67 | 5 | 0.47 | 7 | 0.62 |
RM447 | 8 | (CTT)8 | 8 | 0.65 | 4 | 0.48 | 4 | 0.49 | 4 | 0.39 |
RM474 | 10 | (AT)13 | 14 | 0.87 | 12 | 0.71 | 6 | 0.67 | 7 | 0.55 |
RM510 | 6 | (GA)15 | 7 | 0.58 | 6 | 0.47 | 3 | 0.30 | 4 | 0.39 |
RM538 | 5 | (GA)14 | 11 | 0.69 | 11 | 0.68 | 6 | 0.48 | 6 | 0.41 |
RM1227 | 12 | (AG)15 | 8 | 0.77 | 6 | 0.72 | 7 | 0.74 | 6 | 0.67 |
Total | 178 | 159 | 95 | 118 | ||||||
Average | 9.3 | 0.71 | 8.4 | 0.61 | 5.0 | 0.49 | 6.2 | 0.49 | ||