Table 1 Summary of rice microarray platforms available in ROAD
From: The Rice Oligonucleotide Array Database: an atlas of rice gene expression
Platform | No. of probes (oligo length, nt) | MSU RGAP V6 | RAP V3 | KOME cDNA | No. of experiments/samples in ROAD | |||
|---|---|---|---|---|---|---|---|---|
No. of matched probes | No. of matched loci/gene models | No. of matched probes | No. of matched loci/gene models | No. of matched probes | No. of matched cDNAs | |||
Affymetrix | 57,381 (25) | 44,399 | 37,993/47,652 | 33,070 | 27,778/34,559 | 30,690 | 34,438 | 62/1,155 |
Agilent 22K | 22,575 (60) | 16,864 | 15,974/22,774 | 18,853 | 18,010/20,883 | 21,393 | 24,284 | 19/104 |
Agilent 44K | 45,220 (60) | 35,287 | 24,259/33,301 | 35,928 | 24,467/31,643 | 34,512 | 32,092 | 12/77 |
BGI/Yale | 60,727 (70) | 35,269 | 31,949/40,904 | 29,042 | 25,182/30,581 | 26,645 | 30,076 | 6/322 |
NSF 20K | 21,120 (50-70) | 18,156 | 18,150/23,489 | 12,697 | 13,040/15,879 | 10,982 | 15,311 | 2/120 |
NSF 45K | 43,311 (50-70) | 39,372 | 37,792/46,251 | 22,996 | 22,608/27,223 | 19,338 | 24,956 | 4/89 |