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Table 1 Summary of rice microarray platforms available in ROAD

From: The Rice Oligonucleotide Array Database: an atlas of rice gene expression

Platform No. of probes (oligo length, nt) MSU RGAP V6 RAP V3 KOME cDNA No. of experiments/samples in ROAD
No. of matched probes No. of matched loci/gene models No. of matched probes No. of matched loci/gene models No. of matched probes No. of matched cDNAs
Affymetrix 57,381 (25) 44,399 37,993/47,652 33,070 27,778/34,559 30,690 34,438 62/1,155
Agilent 22K 22,575 (60) 16,864 15,974/22,774 18,853 18,010/20,883 21,393 24,284 19/104
Agilent 44K 45,220 (60) 35,287 24,259/33,301 35,928 24,467/31,643 34,512 32,092 12/77
BGI/Yale 60,727 (70) 35,269 31,949/40,904 29,042 25,182/30,581 26,645 30,076 6/322
NSF 20K 21,120 (50-70) 18,156 18,150/23,489 12,697 13,040/15,879 10,982 15,311 2/120
NSF 45K 43,311 (50-70) 39,372 37,792/46,251 22,996 22,608/27,223 19,338 24,956 4/89