A predicted protein interactome for rice

Ho, Chai-Ling; Wu, Yingzhou; Shen, Hong-bin; Provart, Nicholas J; Geisler, Matt

doi:10.1186/1939-8433-5-15

Rice

Table 1 Twenty rice protein interactions with the highest confidence

From: A predicted protein interactome for rice

Locus A*	Locus B*	Protein A	Protein B	CV
Os11g40150	Os11g40150	DNA repair protein RAD51 homolog A	DNA repair protein RAD51 homolog A	2080
Os03g53960	Os10g28040	transcriptional adaptor	general control of amino acid synthesis protein 5-like 2	2048
Os01g72880	Os02g37920	MUTL protein homolog 1	ATP binding protein	2040
Os02g30800	Os05g06840	DNA polymerase family B, exonuclease domain containing protein, expressed	DNA polymerase epsilon subunit 2	1404
Os07g02350	Os10g41520	casein kinase II subunit alpha-2	casein kinase II subunit beta-4	1368
Os03g63940	Os05g45420	protein kinase AKINbetagamma-2	SNF1-related protein kinase catalytic alpha subunit KIN10	1281
Os02g29464	Os04g54340	DNA repair protein RAD50	double-strand break repair protein MRE11	1254
Os02g38340	Os08g28190	actin-like protein 3	actin-like protein 2	1155
Os04g43300	Os05g43610	ATBRCA1	ATBRCA1	1040
Os06g43790	Os12g39070	HAF01	TATA-binding protein 2	1026
Os02g52510	Os11g40150	DNA repair protein RAD54-like, putative	DNA repair protein RAD51 homolog A	952
Os03g46650	Os05g26890	guanine nucleotide-binding protein beta subunit	guanine nucleotide-binding protein alpha-1 subunit	936
Os11g29380	Os12g37400	DNA replication licensing factor Mcm2	PROLIFERA protein	800
Os03g01100	Os10g37490	DNA repair endonuclease UVH1	mating-type switching protein swi10	783
Os01g08540	Os05g19270	DNA mismatch repair protein MSH6-2	DNA mismatch repair protein MSH2	774
Os01g32750	Os03g29470	TBP-associated 59 kDa subunit protein	transcription initiation factor TFIID subunit 9B	756
Os01g64820	Os12g13950	DNA polymerase alpha catalytic subunit	DNA polymerase alpha subunit B	720
Os01g07110	Os11g40150	BRCA2 repeat family protein	DNA repair protein RAD51 homolog A	714
Os06g08770	Os07g08170	ruvB-like 2	ruvB-like 1	651
Os03g02680	Os03g05300	cell division control protein 2 homolog 1	cyclin-dependent kinases regulatory subunit	648

*rice locus identifiers are also written as e.g. LOC_Os11g40150.

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