Table 2 Number of Pi stress-responsive transcripts identified by G test
From: mRNA-Seq Reveals a Comprehensive Transcriptome Profile of Rice under Phosphate Stress
Expression patterns | Number of responsive transcripts | ||||||||
|---|---|---|---|---|---|---|---|---|---|
Tissue | Treatment | Response | Time point | Total | RAP/array | RAP not identified by array | Unannotated | Novel (%) | Transcripts with P1BS |
Root | −P | Upregulated | Early (1 d) | 230 | 201 | 27 | 2 | 12.6 | 43 |
Middle (5Â d) | 354 | 286 | 68 | 0 | 19.2 | 71 | |||
Late (10Â d) | 503 | 434 | 68 | 1 | 13.7 | 170a | |||
Dowregulated | Early (1Â d) | 148 | 112 | 35 | 1 | 24.3 | 21 | ||
Middle (5Â d) | 171 | 156 | 15 | 0 | 8.8 | 31 | |||
Late (10Â d) | 246 | 221 | 24 | 1 | 10.2 | 54 | |||
++P | Upregulated | Early (1Â d) | 233 | 192 | 40 | 1 | 17.6 | 58 | |
Middle (5Â d) | 472 | 399 | 69 | 4 | 15.5 | 105 | |||
Late (10Â d) | 265 | 203 | 57 | 5 | 23.4 | 54 | |||
Dowregulated | Early (1Â d) | 209 | 186 | 21 | 2 | 11.0 | 39 | ||
Middle (5Â d) | 203 | 181 | 22 | 0 | 10.8 | 39 | |||
Late (10Â d) | 208 | 186 | 22 | 0 | 10.6 | 52 | |||
Shoot | −P | Upregulated | Early (1 d) | 224 | 199 | 22 | 3 | 11.2 | 47 |
Middle (5Â d) | 117 | 103 | 14 | 0 | 12.0 | 25 | |||
Late (10Â d) | 216 | 182 | 32 | 2 | 15.7 | 74a | |||
Dowregulated | Early (1Â d) | 454 | 400 | 53 | 1 | 11.9 | 110 | ||
Middle (5Â d) | 83 | 71 | 11 | 1 | 14.5 | 20 | |||
Late (10Â d) | 205 | 183 | 22 | 0 | 10.7 | 39 | |||
++P | Upregulated | Early (1Â d) | 588 | 498 | 88 | 2 | 15.3 | 145 | |
Middle (5Â d) | 466 | 397 | 68 | 1 | 14.8 | 94 | |||
Late (10Â d) | 166 | 139 | 27 | 0 | 16.3 | 40 | |||
Dowregulated | Early (1Â d) | 1,136 | 1,014 | 118 | 4 | 10.7 | 252 | ||
Middle (5Â d) | 168 | 152 | 15 | 1 | 9.5 | 37 | |||
Late (10Â d) | 82 | 77 | 5 | 0 | 6.1 | 15 | |||