Table 1 Mapping of mRNA-Seq reads obtained from each sample into the reference rice genome sequence
From: mRNA-Seq Reveals a Comprehensive Transcriptome Profile of Rice under Phosphate Stress
mRNA-Seq library | Total PF reads | Unique | % | Multiple | % | Unmapped | % |
|---|---|---|---|---|---|---|---|
Root, +P_0d (control) | 13,922,030 | 3,738,255 | 26.9 | 4,344,200 | 31.2 | 5,839,575 | 41.9 |
Root, −P_1d | 8,411,989 | 2,314,238 | 27.5 | 2,827,342 | 33.6 | 3,270,409 | 38.9 |
Root, −P_5d | 30,403,973 | 8,057,787 | 26.5 | 7,213,838 | 23.7 | 15,132,348 | 49.8 |
Root, −P_10d | 6,696,463 | 2,495,317 | 37.3 | 2,459,102 | 36.7 | 1,742,044 | 26.0 |
Root, −P_10d_Re_1d | 8,528,677 | 3,311,738 | 38.8 | 2,857,712 | 33.5 | 2,359,227 | 27.7 |
Root, ++P,_1d | 15,694,862 | 4,738,300 | 30.2 | 5,013,389 | 31.9 | 5,943,173 | 37.9 |
Root, ++P_5d | 13,586,681 | 2,642,094 | 19.4 | 4,000,708 | 29.4 | 6,943,879 | 51.1 |
Root, ++P_10d | 11,027,653 | 1,353,233 | 12.3 | 4,597,218 | 41.7 | 5,077,202 | 46.0 |
Root, ++P_10d_Re_1d | 16,771,413 | 3,827,077 | 22.8 | 5,270,793 | 31.4 | 7,673,543 | 45.8 |
Shoot, +P_0d (control) | 8,515,740 | 2,205,725 | 25.9 | 3,181,292 | 37.4 | 3,128,723 | 36.7 |
Shoot, −P_1d | 8,787,606 | 2,380,054 | 27.1 | 3,319,901 | 37.8 | 3,087,651 | 35.1 |
Shoot, −P_5d | 9,281,244 | 2,278,998 | 24.6 | 4,240,468 | 45.7 | 2,761,778 | 29.8 |
Shoot, −P_10d | 8,258,753 | 2,943,631 | 35.6 | 3,744,753 | 45.3 | 1,570,369 | 19.0 |
Shoot, ++P_1d | 12,145,854 | 3,090,635 | 25.4 | 4,167,569 | 34.3 | 4,887,650 | 40.2 |
Shoot, ++P_5d | 14,586,873 | 4,126,432 | 28.3 | 6,302,429 | 43.2 | 4,158,012 | 28.5 |
Shoot, ++P_10d | 9,086,827 | 3,612,159 | 39.8 | 3,601,872 | 39.6 | 1,872,796 | 20.6 |