Rice

Table 2 QTLs identified from the IR29/Pokkali population of 140 RILs in Experiment 2

From: Characterizing the Saltol Quantitative Trait Locus for Salinity Tolerance in Rice

				QGene			QTL Cartographer
QTL	Chr.	Peak marker	Flanking markers	IM LOD	IM R²	Add. effect^a	IM LOD	IM R²
Initial SES tolerance score
qSES3	3	RM6329	RM6369-RM3867	4.0	0.14	0.46	3.8	0.23
qSES12	12	RM28102	RM27933-RM17	3.1	0.11	0.82	3.4	0.15
Final SES tolerance score
qSES12	12	RM28102	RM27933-RM17	4.9	0.16	1.24	5.5	0.47
Seedling survival
qSUR1	1	RM11757	RM7643-RM11874	3.9	0.13	14.0	3.2	0.11
qSUR ²	2	RM13197	RM300-RM13332	2.8	0.10	−18.1	1.7	0.06
qSUR12	12	RM28102	RM27933-RM17	4.1	0.14	−23.4	4.2	0.38
Leaf chlorophyll content
qCHL1	1	RM11757	RM7643-RM11874	3.4	0.12	0.03	3.6	0.27
qCHL2	2	RM13332	RM13197-RM6318	2.9	0.10	−0.05	4.1	0.52
qCHL3	3	RM6329	RM5626-RM3867	3.2	0.11	−0.04	3.5	0.30
qCHL12	12	RM28102	RM27933-RM17	4.5	0.15	−0.07	3.7	0.15

The RILs were phenotyped in a hydroponic nutrient solution using salt stress of EC 18 dS m⁻¹
^aThe QTLs identified in Experiment 2 on chromosomes 2, 3, and 12 had the tolerance effect from Pokkali, but qSUR1 and qCHL1 on chromosome 1 had IR29 as the source of the tolerant allele

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