Rice

Table 1 QTLs identified from the IR29/Pokkali population of 140 RILs in Experiment 1

From: Characterizing the Saltol Quantitative Trait Locus for Salinity Tolerance in Rice

				QGene			QTL Cartographer
QTL	Chr.	Peak marker	Flanking markers	IM LOD	IM R²	Add. effect^a	IM LOD	IM R²
Seedling height
qPH2	2	RM13332	RM13197-RM6318	5.1	0.16	6.21	11.1	0.67
qPH4	4	RM3843	RM17391-RM127	2.7	0.09	3.81	4.3	0.65
Shoot Na⁺ concentration
qSNC1	1	RM8094	RM1287-RM10793	3.5	0.11	0.22	3.6	0.14
Shoot K⁺ concentration
qSKC1	1	RM10793	RM8094-RM10825	3.3	0.10	−0.18	3.2	0.13
Shoot Na–K ratio
qSNK1	1	RM10793	RM1287-RM10825	6.7	0.20	0.32	7.6	0.27
qSNK9	9	RM24330	RM296-RM7175	3.0	0.09	0.31	2.8	0.25
Root K⁺ concentration
qRKC1	1	RM8094	RM1287-RM11300	3.9	0.12	−0.19	4.0	0.19
qRKC2	2	RM13332	RM13197-RM6318	3.4	0.11	−0.27	3.8	0.36
qRKC6	6	RM20224	RM19840-RM20350	4.0	0.12	−0.20	3.9	0.12
Root Na–K ratio
qRNK1	1	RM10793	RM1287-RM10825	5.5	0.17	0.27	5.5	0.21
qRNK6	6	RM20224	RM19840-RM20350	3.8	0.12	0.23	3.8	0.12
qRNK9	9	RM24330	RM296-RM7175	2.9	0.09	0.29	2.5	0.26
Final SES tolerance score
qSES4	4	RM127	RM3843-RM127	2.9	0.09	0.40	3.1	0.13
qSES9	9	RM24330	RM296-RM7175	2.1	0.07	0.38	2.8	0.55
Leaf chlorophyll content
qCHL2	2	RM13332	RM12713-RM6318	4.6	0.14	−0.03	11.3	0.56
qCHL3	3	RM6329	RM6329-RM3867	4.3	0.13	−0.02	3.1	0.13
qCHL4	4	RM127	RM3843-RM127	4.2	0.13	−0.02	3.9	0.25

The RILs were phenotyped in a hydroponic nutrient solution using salt stress of EC 12 dS m⁻¹
^aAll of the QTLs identified in Experiment 1 had the increased tolerance effect from Pokkali

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