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Rice

Table 1 Frequency of Different Substitutions

From: Assessing the Extent of Substitution Rate Variation of Retrotransposon Long Terminal Repeat Sequences in Oryza sativa and Oryza glaberrima

Subsitution

NRR

LTR

NRRf

LTRf

C<->A (G<->T)

88 (70.58–108.42)

132 (110.44–156.53)

0.0010 (0.0008–0.0012)

0.0014 (0.0012–0.0017)

C<->T (G<->A)

391 (353.20–431.74)

1,140 (1,074.78–1,208.15)

0.0043 (0.0038–0.0047)

0.0110 (0.0103–0.0116)

A<->T

74 (58.11–92.90)

57 (43.17–73.85)

0.0008 (0.0006–0.0010)

0.0006 (0.0005–0.0008)

C<->G

29 (19.42–41.65)

49 (36.25–64.78)

0.0003 (0.0002–0.0005)

0.0005 (0.0004–0.0007)

  1. Values in parenthesis are the confidence intervals calculated assuming the substitutions occurring according a Poisson distribution
  2. Substitution type of substitution; NRR occurrences in NRR sequences; LTR occurrences in LTRs, NRRf and LTRf frequencies of substitution per nucleotide
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