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Rice

Table 3 Nucleotide (SNP) and aa Substitutions Among OsGLP Alleles from Four Rice Cultivars

From: Rice Germin-Like Proteins: Allelic Diversity and Relationships to Early Stress Responses

OsGLP

MSU locus ID

Rice cultivars

Azucena

IR64

SHZ-2

SNPs

aa subs

SNPs

aa subs

SNPs

aa subs

8-1

LOC_Os08g08920

3

1

4

2

1c

–

8-2

LOC_Os08g08960

1

0

3

1a

2

0

8-3

LOC_Os08g08970

0

0

5

1

4

2

8-4

LOC_Os08g08980

1

1

2

1

5

1

8-5

LOC_Os08g08990

1

0

7

1b

3

0

8-6

LOC_Os08g09000

0

0

2

0

0

0

8-7

LOC_Os08g09010

0

0

3

2

2

1

8-8

LOC_Os08g09020

0

0

11

5

3

2

8-9

LOC_Os08g09040

0

0

2

1

0

0

8-10

LOC_Os08g09060

2

0

4

2

0

0

8-11

LOC_Os08g09080

0

0

0

0

18d

–

8-12

LOC_Os08g13440

2

2

5

1

4

1

  1. All reported nucleotide and amino acid substitutions are in reference to allele sequences from the temperate japonica cultivar, LTH
  2. a3-bp deletion/1 amino acid deletion
  3. b3-bp insertion/ 1 amino acid insertion
  4. c1-bp deletion / frameshift mutation/premature termination codon
  5. dNucleotide substitution / premature termination codon
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