Deep and Comparative Transcriptome Analysis of Rice Plants Infested by the Beet Armyworm (Spodoptera exigua) and Water Weevil (Lissorhoptrus oryzophilus)

Rice

Table 4 Conserved cis Motifs in the Promoters of Beet Armyworm and Water Weevil-Induced Defense-Related Genes

GeneID	Os01g03320	Os01g04050	Os01g05650	Os01g09280	Os01g53810	Os01g72420	Os01g73450	Os02g24190	Os02g32200	Os03g07370	Os06g13030	Os07g33110
PLA	60	246	65	99	52	82	67	79	50	176	325	124
PLW	172	181	145	60	79	53	53	52	64	89	114	83
PLC	0	0	2	0	2	0	0	0	0	0	0	0
NLA	0	0	0	0	0	0	0	0	9	0	0	0
ARR1AT	(+)	(+)	(+)	(+)	(+)(−)	(+)	(+)	(+)	(+)	(+)	(+)	(+)
BIHD1OS	(−)	(+)	(+)(−)	(+)	(+)(−)	(+)	(+)	(−)	(+)	(+)	(+)	(+)
CAATBOX1	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)
CACTFTPPCA1	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)
DOFCOREZM	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)
EBOXBNNAPA	(+)	(+)	(+)	(+)(−)	(+)(−)	(+)	(+)	(+)	(+)	(+)	(+)	(+)
GATABOX	(+)	(+)	(+)	(+)	(+)	(+)	(−)	(+)	(+)	(+)	(+)	(+)(−)
GT1CONSENSUS	(+)	(+)	(+)	(+)	(+)	(+)	(−)	(+)	(+)	(+)	(+)	(+)(−)
GT1GMSCAM4	(+)(−)	(+)	(+)(−)	(−)	(+)	(+)	(−)	(−)	(+)	(+)	(+)(−)	(+)(−)
GTGANTG10	(+)(−)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)	(+)(−)	(+)
IBOXCORE	(+)	(+)	(+)	(+)	(−)	(−)	(−)	(+)	(+)(−)	(+)	(+)	(−)
MYCCONSENSUSAT	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)
POLLEN1LELAT52	(+)(−)	(−)	(+)(−)	(+)	(+)(−)	(+)	(+)(−)	(+)(−)	(−)	(+)	(+)(−)	(+)(−)
ROOTMOTIFTAPOX1	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(−)
TATABOX5	(+)(−)	(+)	(−)	(+)(−)	(+)	(−)	(+)	(+)	(+)(−)	(−)	(−)	(+)
WBOXNTERF3	(+)(−)	(−)	(+)	(−)	(+)(−)	(+)	(+)(−)	(+)(−)	(+)(−)	(+)	(−)	(+)(−)
WRKY71OS	(+)(−)	(+)(−)	(+)(−)	(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(+)(−)	(−)	(+)(−)

Plus strand (+); Minus strand (−); Conserved cis elements present in all the 12 defense-related gene promoters are shown; Os01g03320 (Bowman–Birk-type bran trypsin inhibitor precursor; GATCTATTCGTCTATCG); Os01g04050 (Bowman–Birk-type wound-induced proteinase inhibitor WIP1 precursor; GATCTGTGTGATATACA); Os01g05650 (metallothionein-like protein type 2; GATCCAGTTACAAGTGA); Os01g09280 (myb-related transcription activator; GATCAATAAGGCTGATG); Os01g53810 (transferrin receptor-like dimerization domain-containing protein, GATCACTACACGATTCC); Os01g72420 (C2 domain-containing protein; GATCTCTTCTTGCAATT); Os01g73450 (uridylate kinase; GATCTCTAGAGTTTTTA); Os02g24190 (cyclin-dependent protein kinase; GATCATTTGTGTGTGGA); Os02g32200 (thioesterase family protein; GATCACAAATGTCTTCA); Os03g07370 (endonuclease/nucleic acid binding protein; GATCCTGATTTAAGGCA); Os06g13030 (LIM domain-containing protein; GATCCAGCAGAACCTCA); Os07g33110 (calcium-dependent protein kinase, isoform 2; GATCCATCGACTATGTT)