Table 2 Rice Genes Downregulated (≥2-Fold) Following Cellulase Treatment
Probe set IDa | Public IDb | FCAc | Gene descriptiond | Homolog (E score)e |
|---|---|---|---|---|
Cell growth/division | ||||
 Os.27224.2.A1_at | AK103510 | 3.66 | Putative cytokinin dehydrogenase | BAD09964 (8e-59) |
 OsAffx.29543.1.S1_x_at | 9636.m03606 | 3.05 | Putative cytokinin dehydrogenase | BAD09964 (0.0) |
 Os.43596.1.S1_at | CB620528 | 2.62 | Cytokinin oxidase/dehydrogenase | BAE16612 (3e-39) |
 Os.9392.1.S1_at | AK071762 | 2.16 | Auxin/aluminum-responsive protein putative | NP_197415 (3e-86) |
 Os.55455.1.S1_at | AK108118 | 2.06 | Auxin-responsive protein-like | BAD25785 (2e-26) |
 Os.12201.1.S1_at | AK065039 | 2.05 | Putative 1-aminocyclopropane-1-carboxylate oxidase 1 (ACC oxidase 1) | BAD38208 (1e-171) |
Cell structure | ||||
 Os.49281.1.S1_s_at | AK062457 | 4.40 | Putative glycine rich protein | BAD61563 (1e-11) |
 Os.38152.1.S1_at | AK065615 | 3.41 | LrgB-like family protein expressed | AAP55171 (1e-73) |
 OsAffx.11838.1.S1_at | 9629.m07254 | 2.53 | Putative bundle sheath cell specific protein 1 | BAB63632 (8e-60) |
 Os.55444.1.S1_at | AK108103 | 2.34 | Glycine-rich protein | NP_193893 (4e-08) |
 Os.10370.1.S1_at | AK062370 | 2.32 | Putative glycine rich protein | BAD61558 (1e-14) |
 Os.10370.1.S1_x_at | AK062370 | 2.27 | Putative glycine rich protein | BAD61558 (1e-14) |
Disease/defense | ||||
 Os.10401.1.S1_s_at | AK070510 | 2.65 | Putative MtN3 (disease resistant allele XA13) | BAD13168 (1e-141) |
 Os.51641.1.S1_at | AK063248 | 2.55 | Putative pathogenesis-related protein/PR1 like | BAC84818 (2e-67) |
 Os.37893.1.S1_at | AK100346 | 2.46 | Phenylalanine ammonia-lyase | AAO72666 (0.0) |
 Os.37890.1.S1_s_at | AK061288 | 2.09 | Protease inhibitor/seed storage/Lipid Transfer Protein family putative | AAX96637 (4e-39) |
 Os.9679.1.S1_at | AK060077 | 2.03 | Disease resistance-responsive family protein putative expressed | ABA91787 (1e-90) |
 Os.46305.1.S1_at | AK122171 | 2.01 | Leucine Rich Repeat family protein expressed | ABA96188 (0.0) |
 Os.51641.1.S1_x_at | AK063248 | 2.86 | Putative pathogenesis-related protein/ PR1 like | BAC84818 (5e-68) |
Energy | ||||
 Os.12181.1.S1_s_at | AK098872 | 3.26 | Chlorophyll a/b-binding protein CP26 precursor - maize | AAX95978 (7e-146) |
 Os.37713.1.S1_at | AK070051 | 3.23 | Putative photosystem I antenna protein | BAC83072 (5e-55) |
 Os.28216.2.S1_a_at | AK119545 | 2.59 | Putative chlorophyll A-B binding protein of LHCII type III chloroplast precursor (CAB) | BAC83393 (2e-153) |
 OsAffx.18836.1.S1_at | 9639.m01283 | 2.58 | Chlorophyll a/b-binding protein CP26 precursor - maize | AAX95980 (9e-113) |
 Os.5869.3.S1_x_at | CB667246 | 2.02 | Chlorophyll a/b-binding protein CP24 precursor | AAD27882 (8e-78) |
Intracellular traffic | ||||
 Os.2759.1.S1_s_at | AK099409 | 2.46 | Mitochondrial carnitine/acylcarnitine carrier putative expressed | AAP55124 (3e-116) |
 Os.11654.1.S1_at | AK065544 | 2.26 | SOUL heme-binding protein-like | BAD32927 (8e-174) |
Metabolism | ||||
 Os.11789.1.S1_at | AK099538 | 3.18 | Putative lysine decarboxylase-like protein | AAN61486 (1e-111) |
 Os.26441.2.S1_at | AK119461 | 2.84 | Putative beta-glycosidase | CAD36515 (0.0) |
 Os.7669.1.S1_at | CB643976 | 2.69 | Putative fatty acid elongase | AAR96244 (5e-57) |
 Os.6595.1.S1_a_at | AK062262 | 2.65 | Magnesium-chelatase subunit H family protein expressed | ABF95686 (0.0) |
 Os.14145.1.A1_at | AK070312 | 2.56 | Ferric reductase | BAD18962 (0.0) |
 Os.27713.1.A1_at | AK120567 | 2.54 | Beta-ketoacyl-coA synthase putative expressed | ABA94525 (0.0) |
 Os.12025.1.S1_a_at | AK099966 | 2.43 | Hydrolase/alpha/beta fold family protein | NP_175660 (3e-153) |
 Os.15570.1.S1_at | AK068586 | 2.40 | Putative glucosyltransferase-3 UDP-glucoronosyl and UDP-glucosyl transferase | BAC83960 (0.0) |
 Os.25109.1.S1_at | AK105536 | 2.35 | Mannan endo-1 4-beta-mannosidase 7 (OsMAN7) | Q2RBB1 (0.0) |
 Os.17814.2.S1_x_at | AK068064 | 2.33 | Putative malate dehydrogenase | BAC20686 (0.0) |
 Os.12839.1.S1_at | AK060512 | 2.26 | Putative beta-keto acyl reductase | BAD22122 (1e-103) |
 Os.26486.1.S1_at | AK120227 | 2.15 | Putative glossy1 protein/Sterol desaturase | BAD33619 (0.0) |
 OsAffx.27508.100.S1_s_at | AK108972 | 2.15 | Putative methionyl aminopeptidase | BAD08973 (3e-18) |
 Os.9494.1.S1_s_at | CF292249 | 2.14 | Short-chain dehydrogenase/reductase SDR family protein | NP_001053404 (6e-18) |
 Os.9724.1.S1_at | AK104714 | 2.14 | Very-long-chain fatty acid condensing enzyme putative expressed | ABF94686 (0.0) |
 Os.22241.1.S1_s_at | AK099444 | 2.13 | Nitrilase-associated protein putative expressed | ABA98636 (2e-13) |
 Os.14118.1.S1_at | AK099064 | 2.09 | Putative lipase | AAP33477 (3e-100) |
 Os.36960.1.S1_at | AK062283 | 2.08 | Glucosyltransferase NTGT2-like | BAD82532 (0.0) |
 Os.11403.1.S1_at | AK073262 | 2.07 | Putative N-carbamyl-L-amino acid amidohydrolase | BAD45389 (0.0) |
 Os.8569.1.S1_at | AK060559 | 2.01 | Beta-carotene hydroxylase putative expressed | ABF93742 (9e-98) |
 Os.20755.1.S1_at | AK068040 | 2.13 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | NP_196793 (2e-87) |
Otherf | ||||
 Os.51579.1.S1_at | AK063100 | 5.03 | No significant similarity found |  |
 Os.37849.1.A1_at | AK068289 | 3.73 | Unnamed protein product | BAA90498 (2e-07) |
 Os.17536.1.S1_at | AK063180 | 2.90 | Unknown protein | BAD36443 (3e-63) |
 Os.34400.1.S1_at | AK071545 | 2.61 | Protein domain with at least 5 transmembrane alpha-helices | NP_001042652 (2e-102) |
 OsAffx.24703.1.S1_s_at | 9630.m04191 | 2.60 | No significant similarity found |  |
 Os.11944.1.S1_at | AK070758 | 2.53 | No significant similarity found |  |
 Os.55256.1.S1_at | AK107743 | 2.51 | Expressed protein | AAP54198 (8e-09) |
 Os.24338.1.A1_at | AK111667 | 2.47 | Os01g0908300 . | NP_001045142 (8e-51) |
 Os.5066.1.S1_at | AK073193 | 2.45 | Os01g0219300 | NP_001042419 (4e-44) |
 Os.8395.1.S1_at | AK069514 | 2.31 | Expressed protein | ABA98963 (3e-70) |
 OsAffx.23005.1.S1_x_at | AK108349 | 2.31 | Unknown protein | BAD67880 (2e-17) |
 OsAffx.23005.1.S1_at | AK108349 | 2.30 | Unknown protein | BAD67880 (2e-17) |
 Os.10615.1.S1_x_at | AK058921 | 2.22 | No significant similarity found |  |
 Os.10524.2.S1_at | AK060098 | 2.21 | FHA domain containing protein expressed | ABA95708 (4e-83) |
 Os.5648.1.S1_at | AU172533 | 2.21 | No significant similarity found |  |
 OsAffx.14410.1.S1_s_at | 9632.m05269 | 2.13 | Os04g0635000 . | NP_001054004 (6e-11) |
 Os.25052.1.S1_at | CA763439 | 2.10 | Hypothetical protein OsJ_000675 | EAZ10850 (2e-23) |
 Os.49304.1.A1_at | AK063613 | 2.08 | Hypothetical protein OsI_013772 | EAY92539 (1e-34) |
 Os.27659.1.S1_x_at | AK069734 | 2.03 | TMS membrane protein/tumour differentially expressed protein | ABE91594 (4e-133) |
 Os.11190.1.S1_at | AK058995 | 2.01 | Os04g0402700/Hypothetical protein | NP_001052695 (7e-28) |
Protein synthesis/turnover | ||||
 Os.11707.1.A1_at | CB656443 | 4.46 | Putative cysteine proteinase | AAM34401 (7e-37) |
Secondary metabolism | ||||
 Os.9685.1.S1_a_at | AK067949 | 2.51 | Putative cinnamoyl CoA reductase | BAD28656 (2e-171) |
 Os.46551.1.S1_at | AK064736 | 2.31 | Putative chalcone flavonoid 3′ - hydroxylase | AAN04937 (0.0) |
Signal transduction | ||||
 OsAffx.16737.1.S1_at | AK067579 | 3.35 | Phototropic-responsive protein putative/a light-activated serine-threonine protein kinase | NP_187478 (3e-31) |
 Os.12110.1.S1_at | AK064985 | 2.88 | RPT2 expressed /nonphototropic hypocotyl 1 (NPH1)/a serine-threonine protein kinase | ABA91174 (0.0) |
 Os.55822.1.A1_at | AK108850 | 2.39 | Putative serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B’ | BAD67828 (1e-95) |
 Os.7676.1.S1_at | AY476807 | 2.30 | Extracellular calcium sensing receptor | AAS00828 (1e-146) |
 Os.7140.1.S1_at | AK061014 | 2.28 | GUN4-like family protein expressed/regulator of chlorophyll synthesis and intracellular signaling | ABA92587 (4e-110) |
 Os.45531.1.S1_at | CB621884 | 2.19 | Receptor-like kinase | AAF78017 (1e-48) |
 Os.7304.1.S1_at | AK069537 | 2.16 | Putative protein kinase | BAB92217 (0.0) |
 Os.28255.1.S1_at | AK070519 | 2.07 | ABC1 family protein /Mn2+-dependent serine/threonine protein kinase | NP_565025 (0.0) |
Stress | ||||
 Os.53572.1.S1_at | AK073356 | 3.66 | Universal stress protein USP1-like protein | BAC16006 (2e-84) |
 Os.37549.1.S1_at | AK102998 | 3.35 | Auxin/aluminum-responsive protein putative | NP_197415 (3e-10) |
 Os.15692.1.S1_at | AK069017 | 2.68 | Cytochrome P450 family protein expressed | ABF97430 (0.0) |
 Os.5377.1.S1_at | AK105891 | 2.52 | Selenium-binding protein-like (pentatricopeptide repeat-containing protein) | BAD07861 (1e-152) |
 Os.34316.1.S1_at | AK071882 | 2.37 | Hypothetical protein OsJ_021319/DnaJ domains | EAZ37836 (9e-21) |
 Os.17037.1.S2_a_at | CB671899 | 2.20 | Putative Altered Response to Gravity/DnaJ domain | BAD73072 (7e-21) |
 Os.35448.1.S1_at | AK067480 | 2.20 | Thioredoxin h-like protein | AAN63618 (4e-17) |
Transcription | ||||
 Os.46600.1.S1_at | AK058809 | 3.77 | Helix-loop-helix DNA-binding domain containing protein | AAP53429 (7e-113) |
 Os.56880.1.S1_at | AK110526 | 3.66 | Basic-leucine zipper (bZIP) transcription factor domain containing protein | NP_001043273 (5e-39) |
 Os.31716.2.A1_at | BI305433 | 3.03 | Scl1 protein/GRAS family transcription factor | AAF00139 (2e-24) |
 Os.49848.1.S1_at | AK111960 | 2.71 | Putative MYB-related protein 1 | BAD07916 (4e-71) |
 Os.25588.2.S1_x_at | AK101674 | 2.67 | Putative MYB protein | BAC79723 (5e-88) |
 Os.3386.1.S1_x_at | AK062487 | 2.63 | MYB protein | BAD36195 (7e-26) |
 Os.27085.1.A1_at | CB656188 | 2.34 | Putative typical P-type R2R3 MYB protein/SANT domain containing protein | BAD10148 (2e-12) |
 Os.46081.1.S1_at | AK060177 | 2.18 | Hypothetical protein OsJ_029817/transcription factor activity | EAZ15608 (2e-96) |
 Os.16025.1.S1_s_at | CA764046 | 2.14 | Putative bZIP protein HY5 | BAD32844 (1e-07) |
 Os.19539.1.S1_at | AK058932 | 2.04 | Putative DNA helicase | BAD08079 (0.0) |
 Os.11409.1.S1_at | AK063523 | 2.04 | Basic helix-loop-helix putative expressed | ABF93851 (6e-36) |
 Os.17902.1.S1_at | AK111634 | 2.03 | MYB17 protein | CAD44611 (7e-34) |
 Os.26437.1.A1_s_at | CB673064 | 2.02 | bZIP transcription factor family protein expressed | ABA99796 (6e-51) |
 Os.23030.1.S1_at | AK060509 | 2.05 | Arabidopsis NAC domain containing protein 83; transcription factor | NP_196822 (4e-24) |
Transporter | ||||
 Os.11804.1.S1_at | CB624264 | 3.27 | Tryptophan/tyrosine permease family protein expressed . | ABF95016 (3e-111) |
 Os.52259.1.S1_at | AK065945 | 2.55 | Major Facilitator Superfamily protein expressed | ABA91097 (0.0) |
 Os.5210.1.S1_at | AK072183 | 2.49 | Putative sodium-dicarboxylate cotransporter | BAD09278 (0.0) |
 Os.19896.2.S1_x_at | CB623166 | 2.47 | Putative sodium transporter | CAD37186 (1e-64) |
 Os.41637.1.S1_at | CA766063 | 2.40 | MDR-like ABC transporter | CAD59585 (8e-14) |
 Os.27393.1.S1_s_at | AK061521 | 2.39 | MDR-like ABC transporter | CAD59590 (0.0) |
 Os.57530.1.S1_x_at | AJ491855 | 2.27 | Putative sodium transporter | CAD37198 (0.0) |
 Os.25449.1.S1_at | AK108531 | 2.21 | Integral membrane transporter family protein | NP_180886 (1e-62) |
 Os.17299.1.S1_at | CB655994 | 2.18 | Putative glycerol 3-phosphate permease | AAS82603 (7e-112) |
 Os.52960.1.S1_x_at | AK072316 | 2.17 | Putative amino acid permease | AAP46198 (3e-146) |
 Os.17681.1.S1_at | AK072059 | 2.14 | Monosaccharide transporter 1 | BAB19862 (4e-158) |
 Os.21635.1.S1_at | AF543419 | 2.11 | Major facilitator superfamily antiporter | AAN33182 (0.0) |
 Os.52621.1.S1_x_at | AK068351 | 2.04 | Nitrate transporter putative | AAT85061 (8e-162) |
Transposons | ||||
 Os.16593.1.S1_at | BI803439 | 2.14 | Retrotransposon protein putative Ty3-gypsy subclass expressed | ABA92095 (1e-34) |
 Os.24273.1.A1_at | AK102986 | 2.07 | Hypothetical protein osi_009106/transposase activity | EAY87873 (5e-30) |