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Table 2 Number of Genes Significantly (p ≤ 0.001) Upregulated or Downregulated by Factors Environment (P Supply) and Genotype

From: Stress Response Versus Stress Tolerance: A Transcriptome Analysis of Two Rice Lines Contrasting in Tolerance to Phosphorus Deficiency

Tissue

Factor

Regulation

  

−P ↑

−P ↓

NIL6-4 ↑

NIL6-4 ↓

Total

Shoot

Env

2,883

2,968

  

5,851

 

Genotype

  

91

181

272

Root

Env

677

586

  

1,263

 

Genotype

  

42

125

167

 

Interaction

−P ↑ NIL6-4 ↑

−P ↓ NIL6-4 ↑

−P ↑ NIL6-4 ↓

−P ↓ NIL6-4 ↓

 

Shoot

G × E

12

134

9

8

163

Root

G × E

6

9

52

15

82

  1. Env environment, −P ↑ upregulated by P deficiency, −P ↓ downregulated by P deficiency, NIL6-4 ↑ upregulated in NIL6-4, −P ↓ downregulated in NIL6-4, −P ↑ NIL6-4 ↑ upregulated by P deficiency and more so in NIL 6-4, −P ↓ NIL6-4 ↑ downregulated by P deficiency but less so in NIL 6-4, −P ↑ NIL6-4 ↓ upregulated by P deficiency but less so in NIL 6-4, −P ↓ NIL6-4 ↓ downregulated by P deficiency and more so in NIL 6-4