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Table 2 Sugarcane Probe Pairs with t Values of 22–25 That Identify Sorghum Transcripts with SFPs but not ELPs

From: Molecular Markers for Sweet Sorghum Based on Microarray Expression Data

Sugarcane probe set

Probe pair #

Sorghum bicolor ID

Position

Function

t value = 22

Sof.4093.2.S1_at

6

NGH

Ch1_8313833..8313816

 

Sof.4567.1.S1_at

8

Sb01g044810

Ch1_67980922..67980946

MADS-box transcription factor

Sof.5184.2.S1_a_at

6

Sb03g001160

Ch3_991187..991163

Similar to Os02g0294700 protein

SofAffx.1284.1.S1_s_at

3

Sb03g008870

Ch3_9656668..9656644

Unknown

Sof.5348.1.S1_at

11

Sb03g003510

Ch3_3731533..3731509

Ubiquitin-conjugating enzyme E2

Sof.2770.1.S1_at

4

Sb03g041770

Ch3_69253777..69253759

Unknown

Sof.3851.1.S1_at

10

Sb05g004130

Ch5_4878250..4878268

60S ribosomal protein L3

Sof.2692.1.S1_at

5

Sb08g002250

Ch8_2360780..2360756

Cytochrome P450

Sof.4985.2.S1_a_at

10

Sb08g018480

Ch8_48581627..48581646

ATP-citrate synthase

SofAffx.1129.1.S1_at

2

Sb08g021850

Ch8_53598165..53598144

Serine/threonine protein phosphatase

SofAffx.1129.1.S1_at

9

Sb08g021850

Ch8_53598029..53598005

Serine/threonine protein phosphatase

Sof.4246.1.S1_a_at

11

Sb09g005270

Ch9_6772194..6772216

Unknown

t value = 23

Sof.2535.1.A1_at

6

Sb02g011130

Ch2_18051363..18051363

Similar to putative RES protein

Sof.1282.2.S1_a_at

11

NGH

Ch2_57946767..57946743

 

Sof.1664.2.S1_a_at

1

Sb03g033760

Ch3_62018464..62018488

Putative BURP domain-containing protein

SofAffx.1284.1.S1_x_at

2

Sb03g008870

Ch3_9656190..9656166

Unknown

Sof.497.2.S1_at

7

Sb07g027480

Ch7_62509159..62509135

3-Hydroxy-3-methylglutaryl-coA reductase

Sof.1190.1.S1_at

8

Sb07g005930

Ch7_8393958..8393934

Unknown

Sof.2692.1.S1_at

6

Sb08g002250

Ch8_2360760..2360736

Cytochrome P450

Sof.355.1.S1_at

8

Sb09g005570

Ch9_7345144..7345120

Heat shock protein

t value = 24

Sof.4310.1.S1_at

3

Sb01g028500

Ch1_49703504..49703480

Senescence-associated protein like

Sof.4030.1.A1_at

10

Sb02g003450

Ch2_3915697..3915680

Similar to B0616E02-H0507E05.5 protein

Sof.4972.1.S1_a_at

9

NGH

Ch3_17046891..17046867

 

Sof.1835.1.S1_at

3

Sb03g033140

Ch3_61527980..61527956

Putative nuclear RNA binding protein A

Sof.1003.1.S1_at

2

Sb05g002580

Ch5_2717665..2717641

Cytochrome P450

Sof.1694.1.A1_at

9

Sb06g033460

Ch6_61437575..61437596

Similar to H0913C04.1 protein

Sof.3020.2.A1_at

4

Sb09g002960

Ch9_3216665..3216682

Aspartic proteinase

t value = 25

Sof.2803.1.S1_at

11

Sb01g043050

Ch1_66375993..66375971

Unknown

Sof.1537.1.S1_at

7

Sb03g011270

Ch3_12484656..12484632

Mg-protoporphyrin IX monomethyl ester cyclase

Sof.2992.1.A1_at

6

Sb04g037920

Ch4_67480989..67481008

Similar to Os04g0137500

Sof.1443.1.S1_at

7

Sb04g010990

Ch4_15758311..15758334

Unknown

Sof.3814.1.S1_at

11

Sb04g019020

Ch4_44439307..44439289

Fructose bisphosphate aldolase

Sof.3699.1.A1_at

4

Sb07g005850

Ch7_8311400..8311376

Equilibrative nucleoside transporter 1

Sof.2286.1.A1_at

2

Sb09g025350

Ch9_54815478..54815502

Similar to Os05g051300

Sof.1994.1.S1_x_at

7

Sb10g005375

Ch10_4802664..4802640

 
  1. NGH Non-genic hit