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Table 4 Candidate Genes in the HWC2 Region with the aid of RiceGAAS (Sakata et al. 2002)

From: Fine Mapping of HWC2, a Complementary Hybrid Weakness Gene, and Haplotype Analysis Around the Locus in Rice

ORF

Protein

Rice ESTs

EST source

Corresponding predicted genes in

RAP-DBa

MSU rice genome annotationb

1

Putative XA1

AK105096c

Nipponbare

Os04g0622600

LOC_Os04g53160

AB002266d

IRBB1

2

putative RING3

AK067276c

Nipponbare

Os04g0623100

LOC_Os04g53170

3

Unknown protein

AK105231c

Nipponbare

Os04g0623200

LOC_Os04g53180

4

Hypothetical protein

  

None

None

5

Putative LSD1

AK064902c

Nipponbare

Os04g0623300

LOC_Os04g53190

  1. aThe Rice Annotation Project (2008)
  2. bOuyang et al. (2007)
  3. cThe Rice Full-Length cDNA Consortium (2003)
  4. dYoshimura et al. (1998)