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Fig. 2 | Rice

Fig. 2

From: Fine Mapping of HWC2, a Complementary Hybrid Weakness Gene, and Haplotype Analysis Around the Locus in Rice

Fig. 2

Haplotype diversity around the HWC2 locus. Banding patterns of 15 DNA markers around HWC2 locus from KGC4M1 to KGC4M52 were analyzed for 33 cultivars whose genotypes of the HWC2 locus had been identified, including parental cultivars of the fine mapping of the HWC2 gene (Table 2). When the countries from which cultivars are originated are not specified, they are from Japan. The same banding patterns as Nipponbare are indicated by solid rectangles; the other patterns are indicated by shaded and dotted rectangles. Open rectangles indicate that no bands appeared. To the left is the genetic relationship among the 13 haplotypes by UPGMA cluster analysis. Each fragment size of the 15 DNA markers was treated as a unique characteristic and scored as present (1) or absent (0). The data matrix was used to calculate genetic similarities using the Jaccard (1908) coefficient.

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